View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0928_high_31 (Length: 532)
Name: NF0928_high_31
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_high_31 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-159; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 203 - 503
Target Start/End: Original strand, 26662284 - 26662584
Alignment:
| Q |
203 |
aaccaataaagtaaacacaattaagaaaggtagtcaaacaagcaaaacatcaaatttgagtataaaaatcatatttgaagtcaaaagctcctagttacaa |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26662284 |
aaccaataaagtaaacacaattaagaaaggtagtcaaacaagcaaaacatcaaatttgagtataaaaatcatatttgaagtcaaaagctcctagttacaa |
26662383 |
T |
|
| Q |
303 |
gttaaaatcaattattgagggaaaatcaatcccaatcaacatcatccacagacagtttccttatcgtcctgccgtgttttgtagacagaattttcacctt |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
26662384 |
gttaaaatcaattattgagggaaaatcaatcccaatcaacatcatccacaaacagtttccttatcgtcctgccgtgttttctagacagaattttcacctt |
26662483 |
T |
|
| Q |
403 |
ttcatgaaagtgttttcttcttgaattccaacaaaagttcgttgatttgctccgacaaaccttctttaatgtgatccatgtccattttcaattcagtcag |
502 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26662484 |
ttcatgaaagtgttttcttcttgaattccgacaaaagttcgttaatttgctccgacaaaccttctttaatgtgatccatgtccattttcaattcagtcag |
26662583 |
T |
|
| Q |
503 |
c |
503 |
Q |
| |
|
| |
|
|
| T |
26662584 |
c |
26662584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 18 - 185
Target Start/End: Original strand, 26662063 - 26662230
Alignment:
| Q |
18 |
aaggatgtgagaacgttttatatatgtgatcggagggaatattgatattgtttgtgtgccttagaggtttactaaggttaacctaaaagtgatcaacttg |
117 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26662063 |
aaggatgtgagaacgttttatatatatgatcggagggaatattgatattttttgtgtgccttagaggtttactaaggttaacctaaaagtgatcaacttg |
26662162 |
T |
|
| Q |
118 |
atttgaatgaaaaattccagttgaagatttattcttttaaccataattctccttctccaaccccccaa |
185 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26662163 |
atttgaatgaaaaattccagttgaagatttattcttttaaccataattctccttctccaaccccccaa |
26662230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 72 - 110
Target Start/End: Original strand, 26667073 - 26667111
Alignment:
| Q |
72 |
tgtgccttagaggtttactaaggttaacctaaaagtgat |
110 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
26667073 |
tgtgccttataggtttactaaggttaaactaaaagtgat |
26667111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 328 times since January 2019
Visitors: 6714