View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_high_32 (Length: 517)
Name: NF0928_high_32
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_high_32 |
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Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 165 - 504
Target Start/End: Complemental strand, 54276468 - 54276129
Alignment:
| Q |
165 |
atatggtatagtgagttgagtagtctttaactttaagtatgtttttgacatccaattggagaacaagcaagcaaacaatctgaaaaccaaaattacagca |
264 |
Q |
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| T |
54276468 |
atatggtatagtgagttgagtagtctttaactttaagtatgtttttgatatccaattggagaacaagcaagcaaacaatctgaaaaccaaaattacagca |
54276369 |
T |
|
| Q |
265 |
acggtgattgagtatttgtgtgcaagatcccattctaagcttcacattacatagacattctaaacacaagacacattttccacctctatgtgcatctcct |
364 |
Q |
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| T |
54276368 |
acggtgattgagtatttgtgtgcaagatcccattctaagcttcacattacatagacattctaaacacaagacacattttccacctctatgtgcatctcct |
54276269 |
T |
|
| Q |
365 |
tgcaaatagcaaatgttccagaagaaataataaaggaaaattctactctacgtccccaaataagtccccatgccccatacattttgcctccacacttttc |
464 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54276268 |
tgcaaatagcaaatgttccagaagaaataataaaggaaaattttactctacgtccccaaataagtccccatgccccatacattttgcctccacacttttc |
54276169 |
T |
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| Q |
465 |
acaaaagaaaatatctcaatatttctggacatttttattc |
504 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
54276168 |
acaaaagaaaatatctcaatatttctggacatttttattc |
54276129 |
T |
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