View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_high_33 (Length: 509)
Name: NF0928_high_33
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_high_33 |
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Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Original strand, 25899809 - 25900260
Alignment:
| Q |
1 |
acgaattgtataccgccattttcaactcacacaagaggcttttcccatatcatatggagtcattcgagcaaatacctgcaaaatgtattcaataaatttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25899809 |
acgaattgtataccgccattttcaactcacacaagaggcttttcccatatcatatggagtcattcgagcaaatacctgcaaaatgtattcaataaatttc |
25899908 |
T |
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| Q |
101 |
tctgt---acattgct-ttgtatttgataatgattttttaaccataaacctttctgattcttattttaagaacagtttctgttctcaaagccgttagaat |
196 |
Q |
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||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25899909 |
tctctgagacattgctcttgtatttgataatgattttttaaccataaacctttctgattcttattttaagaacagtttctgttctcaaagccgttagaat |
25900008 |
T |
|
| Q |
197 |
caacgataatgcaccaaataccatcaataagttgtgcaagtgagagacatagatgattttttaatttaatattgtaaaaatgatgccttcttttaagttt |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25900009 |
caacgataatgcaccaaataccatcaataagttgtgcaagtgagagacatagatgattttttaatttaatattgtaaaaatgatgccttcttttaagttt |
25900108 |
T |
|
| Q |
297 |
caagtgtatgaagagctttgttaatgtcttcttctaacgttgttacataaaatgaccaaacagacctacgccaaatatcgcagatgagtt-----atctg |
391 |
Q |
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| T |
25900109 |
caagtgtacgaagagctttgttaatg---tcttctaacgttgttacataaaatgaccaaacagacccacgccaaatatcgtacatgagttatctgatctg |
25900205 |
T |
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| Q |
392 |
aagtatgagcatacaaccgcaaacaaaccaactactcccgcacattgtaactggt |
446 |
Q |
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| T |
25900206 |
aagtatgagcatacaaacgcaaacaaaccaactactcccacacattgtaactggt |
25900260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 1e-33; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 148 - 408
Target Start/End: Complemental strand, 40068242 - 40067992
Alignment:
| Q |
148 |
ttctgattcttattttaagaacagtttctgttctcaaagccgttagaatcaacgataatgcaccaaataccatcaataagttgtgcaagtgagagacata |
247 |
Q |
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||||| ||| ||| || ||||||||||||||||||||||| ||| ||| |||| |||| ||||||||||| |||||||| | ||||| |||| | |
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| T |
40068242 |
ttctggttcctatgttgagaacagtttctgttctcaaagctgttggaaccaacaataaagcaccaaatacagtcaataagcttggcaagagagaaa---- |
40068147 |
T |
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| Q |
248 |
gatgattttttaatttaatattgtaaaaatgatgccttcttttaagtttcaagtgtatgaagagctttgttaatgtcttcttctaacgttgttacat-aa |
346 |
Q |
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| T |
40068146 |
gatgatttttc----taatattgtaaaaatgatgccttcatttaagtttcaggtgtatgaagagatctgccaatg---tcttctaacgatgttgcataaa |
40068054 |
T |
|
| Q |
347 |
aatgaccaaacagacctacgccaaatatcgcagatgagttatctgaagtatgagcatacaac |
408 |
Q |
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| T |
40068053 |
aatgaccaaacagatccacatcaaatatcgcatatgagttgtctgaagtaggaacatacaac |
40067992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 40068449 - 40068361
Alignment:
| Q |
5 |
attgtataccgccattttcaactcacacaagaggcttttcccatatcatatggagtcattcgagcaaatacctgcaaaatgtattcaat |
93 |
Q |
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| T |
40068449 |
attgtgtaccgccattttcgacatacgcacgatgcttttcccatatcatatggagtcattcgagcaaagacctgcaaaatgttttcaat |
40068361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 434 - 509
Target Start/End: Complemental strand, 27105501 - 27105426
Alignment:
| Q |
434 |
cattgtaactggtattagacgcaagttgaaggattttgaaccattacttaatcgctattctgggaattcacgtgtt |
509 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| |||| |||| | |||| |||||||||| ||||| |
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| T |
27105501 |
cattgtagctggtattagacgcaagttgaaggattttgaacctttacctaatggttattatgggaattcatgtgtt |
27105426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 434 - 509
Target Start/End: Complemental strand, 27098502 - 27098427
Alignment:
| Q |
434 |
cattgtaactggtattagacgcaagttgaaggattttgaaccattacttaatcgctattctgggaattcacgtgtt |
509 |
Q |
| |
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||||||| | |||||||||||||| |||||||||||||| || |||| |||| | |||| |||||||||| ||||| |
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| T |
27098502 |
cattgtagcaggtattagacgcaacttgaaggattttgatcctttacctaatggttattatgggaattcatgtgtt |
27098427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 3 - 103
Target Start/End: Complemental strand, 41099555 - 41099456
Alignment:
| Q |
3 |
gaattgtataccgccattttcaactcacacaagaggcttttcccatatcatatggagtcattcgagcaaatacctgcaaaatgtattcaataaatttctc |
102 |
Q |
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||||| |||||| ||||||| | | |||||||||||||||| || ||||||||||||||||| ||||||||| |||||| |||||||||||||| |||| |
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| T |
41099555 |
gaattttataccaccattttga-cacacacaagaggctttttcctcatcatatggagtcattctagcaaatacttgcaaagtgtattcaataaatctctc |
41099457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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