View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0928_high_35 (Length: 491)

Name: NF0928_high_35
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0928_high_35
NF0928_high_35
[»] chr6 (1 HSPs)
chr6 (22-446)||(18640067-18640491)
[»] chr3 (2 HSPs)
chr3 (22-446)||(1836938-1837362)
chr3 (32-424)||(41384602-41384990)


Alignment Details
Target: chr6 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 22 - 446
Target Start/End: Complemental strand, 18640491 - 18640067
Alignment:
Q  22 catcatcaatattccaccgtatatactgactatgnnnnnnngaagcattcaaagtgtcatatttaccttcttctttttcccttaactaacttgccatcat 121  Q
    ||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18640491 catcatcaatattccaccgtatatactgactatgtttttttgaagcattcaaagtgtcatatttaccttcttctttttcccttaactaacttgccatcat 18640392  T
Q  122 gaacccaacccgagtattaacaaccaactgattctatctttctcacacagtgggaatgattaatttgataaaggatttattacgttctatctatttcctc 221  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18640391 gaacccaacctgagtattaacaaccaactgattctatctttctcacacagtgggaatgattaatttgataaaggatttattacgttctatctatttcctc 18640292  T
Q  222 tgctcgattcaattcttgagaatggcgttgctttggaccttttctgttgcattttctcattaccaattgtttaaggattcgctcttttctcacaaaatcg 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18640291 tgctcgattcaattcttgagaatggcgttgctttggaccttttctgttgcattttctcattaccaattgtttaaggattcgctcttttctcacaaaatcg 18640192  T
Q  322 tatcctacccaaggtcttcaccttccacttttcctaataagcccgtttgcgtcatcactggtgtaagttcttttttctttcttccctctcttgcaaattt 421  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  18640191 tatcctacccaaggtcttcaccttccacttttcctaataagcccatttgcgtcatcaccggtgtaagttcttttttctttcttccctctcttgcaaattt 18640092  T
Q  422 cattattactatgtgaattctatca 446  Q
    |||||||||||||||||||||||||    
T  18640091 cattattactatgtgaattctatca 18640067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 380; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 22 - 446
Target Start/End: Original strand, 1836938 - 1837362
Alignment:
Q  22 catcatcaatattccaccgtatatactgactatgnnnnnnngaagcattcaaagtgtcatatttaccttcttctttttcccttaactaacttgccatcat 121  Q
    ||||||||| ||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1836938 catcatcaacattccaccgtatatactgactatgtttttttgaagcattcaaagtgtcatatttaccttcttctttttcccttaactaacttgccatcat 1837037  T
Q  122 gaacccaacccgagtattaacaaccaactgattctatctttctcacacagtgggaatgattaatttgataaaggatttattacgttctatctatttcctc 221  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||     
T  1837038 gaacccaacctgagtattaacaaccaactgattctatctttctcacacagtgggaatgattaatttgataaaggatttattacggtctatctatttccta 1837137  T
Q  222 tgctcgattcaattcttgagaatggcgttgctttggaccttttctgttgcattttctcattaccaattgtttaaggattcgctcttttctcacaaaatcg 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1837138 tgctcgattcaattcttgagaatggcgttgctttggaccttttctgttgcattttctcattaccaattgtttaaggattcgctcttttctcacaaaatcg 1837237  T
Q  322 tatcctacccaaggtcttcaccttccacttttcctaataagcccgtttgcgtcatcactggtgtaagttcttttttctttcttccctctcttgcaaattt 421  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  1837238 tatcctacccaaggtcttcaccttccacttttcctaataagcccgtttgcgtcatcaccggtgtaagttcttttttctttcttccctctcttgcaaattt 1837337  T
Q  422 cattattactatgtgaattctatca 446  Q
    |||||| ||||||||||||||||||    
T  1837338 cattataactatgtgaattctatca 1837362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 32 - 424
Target Start/End: Complemental strand, 41384990 - 41384602
Alignment:
Q  32 attccaccgtatatactgactatgnnnnnnngaagcattcaaagtgtcatatttaccttcttctttttcccttaactaacttgccatcatgaacccaacc 131  Q
    |||||||||||||||||||||||        ||||||||||||||||||||||| ||||||||||   ||||||||| |||| |||||||||||||||||    
T  41384990 attccaccgtatatactgactattttattctgaagcattcaaagtgtcatattttccttcttctt---cccttaactgactt-ccatcatgaacccaacc 41384895  T
Q  132 cgagtattaacaaccaac--tgattctatctttctcacacag----------tgggaatgattaatttgataaaggatttattacgttctatctatttcc 219  Q
     || |||||| ||||||   | ||| | ||| |||||||||           |||||||||||||||||||||||||||||||||  ||| |||||||||    
T  41384894 tgaatattaagaaccaaaattcattatttctctctcacacacacaaacaaaatgggaatgattaatttgataaaggatttattacagtctctctatttcc 41384795  T
Q  220 tctgctcgattcaattcttgagaatggcgttgctttggaccttttctgttgcattttctcattaccaattgtttaaggattcgctcttttctcacaaaat 319  Q
    | ||||||||||||        |||| ||||||| ||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  41384794 tatgctcgattcaa--------aatgacgttgctatggactttttcggttgcattttctaattaccaattgtttaaggattcgctcttttctcacaaaat 41384703  T
Q  320 cgtatcctacccaaggtcttcaccttccacttttcctaataagcccgtttgcgtcatcactggtgtaagttcttttttctttcttccctctcttgcaaat 419  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    |||||||||||||||||||    
T  41384702 cgtatcctacccaaggtcttcaccttccacttatcctaataagcccgtttgcgtcatcaccggtgtaagttcttttt----tcttccctctcttgcaaat 41384607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 841 times since January 2019
Visitors: 6719