View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_high_38 (Length: 487)
Name: NF0928_high_38
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_high_38 |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 15 - 389
Target Start/End: Original strand, 47561758 - 47562131
Alignment:
| Q |
15 |
tatcaatagggaaattggttgaagcacctatataatcttagtactgcaagataacaaaggaaaataaaatgagaaaattgatactgtaaaatctaattta |
114 |
Q |
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| T |
47561758 |
tatcaatagggaaattggttgaagcacctatataatcttagtactgcaagataacaaaggaaaataaaatgagaaaattgatactgtaaaatctaattta |
47561857 |
T |
|
| Q |
115 |
ttaaggagatattttcgttgtgcataaaagatagcaaaatatgattactggctattggatgtaaatattttttatcatcaactatatatgcatgtatttg |
214 |
Q |
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| T |
47561858 |
ttaaggagatattttcgttgtgcataaaagatagcaaaatatgattacttgctattggatgtaaatattttttatcatcaactatatatgcatgtatttg |
47561957 |
T |
|
| Q |
215 |
tatagatgttaaacacattgtcttaagatgatattgttgatnnnnnnnnntattatttttactttacatgaaaagaaaccacataaacttaaaagtatag |
314 |
Q |
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| T |
47561958 |
tatagatgttaaacacattgtcttaagatgatattgttgat-aaaaaaaatattatttttactttacatgaaaagaaaccacataaacttaaaagtatag |
47562056 |
T |
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| Q |
315 |
aacaaatataatttatcagataggtcatttaccttacacgtaataaacaattgactcgggcagacaaattgtcta |
389 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47562057 |
aacatatataatttatcagataggtcatttaccttacacgtaataaacaattgactcgggcagacaaattgtcta |
47562131 |
T |
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