View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_high_44 (Length: 471)
Name: NF0928_high_44
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_high_44 |
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Alignment Details
Target: chr6 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 79 - 437
Target Start/End: Complemental strand, 2060193 - 2059838
Alignment:
| Q |
79 |
gtgagatgaagcaagcaccccagaaatcaaatttcttaatccnnnnnnngggtatgttctaaaattaccttaaagtaattatgacttaaagtcaaattat |
178 |
Q |
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| T |
2060193 |
gtgacatgaagcaagcaccc-agaaatcaaatttcttaatcctttttttggttatgttctaaaattacct-aaagtaattatgacttcaagtcaaattat |
2060096 |
T |
|
| Q |
179 |
taggaagaacttatgtatnnnnnnngctcaattttagggtcaaaaacatcaaaacaccttcaatcatggtggtcatcaatcaaatagcaaatagttttga |
278 |
Q |
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| T |
2060095 |
taggaagaacttatgtataaaaaaagctcatttttagggtcaaaaacatcaaaacacct-caatcatggtggtcatcaatcaaatagcaaatagttttga |
2059997 |
T |
|
| Q |
279 |
aatgaaagtagattagcaatgctatttcttgcaactaatatcatctcgaaagttttgcgaataaagtttcaaccaattaagttgtgcctttcacggaaaa |
378 |
Q |
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| T |
2059996 |
aatgaaagtagattagcaatgctatttctcgcaactaatatcatctcgaaagtttcgcgaataaagtttcaaccaattaagttgtgcctttcacggaaaa |
2059897 |
T |
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| Q |
379 |
cagagcaagtattgcttgtatgtggttacatgttttatacacttaagccatcgtgagag |
437 |
Q |
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| T |
2059896 |
caaagcaagtattgcttgtatgtggttacatgttttatacacttaagccattgtgagag |
2059838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 204 - 417
Target Start/End: Complemental strand, 2063833 - 2063620
Alignment:
| Q |
204 |
gctcaattttagggtcaaaaacatcaaaacaccttcaatcatggtggtcatcaatcaaatagcaaatagttttgaaatgaaagtagattagcaatgctat |
303 |
Q |
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| T |
2063833 |
gctcatttttagggtaaaaaacatcaaaacaccttaagtcatggtggtcatcaatcaaatagcaaatagttttgaaatgaaagtagattagcaatgctat |
2063734 |
T |
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| Q |
304 |
ttcttgcaactaatatcatctcgaaagttttgcgaataaagtttcaaccaattaagttgtgcctttcacggaaaacagagcaagtattgcttgtatgtgg |
403 |
Q |
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| T |
2063733 |
ttctcgcaactaatatcatctcgaaagtttcacgaataaagtttcaacaaatgaagtagtgtctttcacgaaaaacatagcaagtattgcttgtatgtgg |
2063634 |
T |
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| Q |
404 |
ttacatgttttata |
417 |
Q |
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||| | |||||||| |
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| T |
2063633 |
ttaaacgttttata |
2063620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 167 - 296
Target Start/End: Complemental strand, 2055773 - 2055641
Alignment:
| Q |
167 |
aagtcaaattattaggaagaac-ttatgtatnnnnnnngctcaattttagggtcaaaaacatcaaaacaccttc---aatcatggtggtcatcaatcaaa |
262 |
Q |
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|||||||||||||||||||||| |||||||| ||||| |||||||||||||| ||||||| ||||||| | |||||||| |||| ||||| |
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| T |
2055773 |
aagtcaaattattaggaagaacgttatgtataaaagaagctcatttttagggtcaaaatcatcaaa-caccttcttcagtcatggtgatcattgatcaag |
2055675 |
T |
|
| Q |
263 |
tagcaaatagttttgaaatgaaagtagattagca |
296 |
Q |
| |
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||||||| |||||| |||| |||||||||||||| |
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| T |
2055674 |
tagcaaagagttttaaaataaaagtagattagca |
2055641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 419
Target Start/End: Original strand, 20163111 - 20163193
Alignment:
| Q |
338 |
aataaagtttcaaccaattaagttgtgcctttca-cggaaaacagagcaagtattgcttgtatgtggttacatgttttataca |
419 |
Q |
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||||||||||||| |||||||| ||| |||| ||||||||| | |||||||| |||||||||||| ||||||||||||| |
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| T |
20163111 |
aataaagtttcaaacaattaagcagtgtcttttttcggaaaacatggtaagtattgtttgtatgtggttgcatgttttataca |
20163193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 419
Target Start/End: Complemental strand, 20194385 - 20194303
Alignment:
| Q |
338 |
aataaagtttcaaccaattaagttgtgcctttca-cggaaaacagagcaagtattgcttgtatgtggttacatgttttataca |
419 |
Q |
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||||||||||||| |||||||| ||| |||| ||||||||| | |||||||| |||||||||||| ||||||||||||| |
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| T |
20194385 |
aataaagtttcaaacaattaagcagtgtcttttttcggaaaacatggtaagtattgtttgtatgtggttgcatgttttataca |
20194303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 419
Target Start/End: Complemental strand, 44278897 - 44278815
Alignment:
| Q |
338 |
aataaagtttcaaccaattaagttgtgcctttca-cggaaaacagagcaagtattgcttgtatgtggttacatgttttataca |
419 |
Q |
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||||||||||||| |||||||| ||| |||| ||||||||| | |||||||| |||||||||||| ||||||||||||| |
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| T |
44278897 |
aataaagtttcaaacaattaagcagtgtcttttttcggaaaacatggtaagtattgtttgtatgtggttgcatgttttataca |
44278815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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