View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_high_45 (Length: 471)
Name: NF0928_high_45
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_high_45 |
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Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 17 - 438
Target Start/End: Original strand, 8306608 - 8307029
Alignment:
| Q |
17 |
acaaaaataacatgaaactaaaaagataaaagacagtatcatcattatttaaaattaaggtggggacaccgagtgtatttttgcctttagaatattcatc |
116 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
8306608 |
acaaaaataacatgaaactaaaaagataaaagacaatatcatcattatttaaaattaaggtggggataccgagtgtatttttgcctttagaatattcatc |
8306707 |
T |
|
| Q |
117 |
ttttattggtgtaacttctaagatcgtggtgttttccctcgaaaataagatcgcggtaatcccctaaaagaatattgcggtattaatgctctatttaaat |
216 |
Q |
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|||| ||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8306708 |
ttttgttggtgtaacttctaagatcgtggtattttccctcaaaaataagatcgtggtaatcccctaaaagaatattgcggtattaatgctctatttaaat |
8306807 |
T |
|
| Q |
217 |
tatatttagcctaaattatattcaagtacttatccttgaatcaaaaatgttcacgtactaannnnnnnnctttcgttcggatggaatttacatatattct |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
8306808 |
tatatttagcctaaattatattcaagtacttatccttgaatcaaaaatgttcacgtactaattttttttctttcgttcggatggaatttacatatattct |
8306907 |
T |
|
| Q |
317 |
ctaataagagaatctcatacacattttcttgtgttatggacttcatatatttccactacgctaactccatcaatatctacatatttcattacttaggcca |
416 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
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| T |
8306908 |
ctaataagagtatctcatacacattttcttgtgttatggacttcatatatttccactacgctaactccatcaatatctatatattttattacttaggcca |
8307007 |
T |
|
| Q |
417 |
tatgtcttattcaacttttaaa |
438 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
8307008 |
tatgtcttattcaacttttaaa |
8307029 |
T |
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