View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0928_high_46 (Length: 464)

Name: NF0928_high_46
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0928_high_46
NF0928_high_46
[»] chr6 (3 HSPs)
chr6 (220-449)||(33986814-33987044)
chr6 (296-449)||(11074558-11074701)
chr6 (138-180)||(7546512-7546554)
[»] chr1 (4 HSPs)
chr1 (220-395)||(44719862-44720037)
chr1 (220-439)||(11060115-11060335)
chr1 (220-440)||(1408145-1408368)
chr1 (283-376)||(36395702-36395795)
[»] chr8 (8 HSPs)
chr8 (250-441)||(31074535-31074727)
chr8 (220-396)||(9625924-9626100)
chr8 (220-439)||(28525276-28525493)
chr8 (220-449)||(28005840-28006052)
chr8 (220-449)||(28063143-28063355)
chr8 (196-319)||(36033158-36033277)
chr8 (118-184)||(1579090-1579157)
chr8 (118-181)||(38387873-38387937)
[»] chr7 (1 HSPs)
chr7 (220-449)||(330412-330642)
[»] chr5 (5 HSPs)
chr5 (202-386)||(28864741-28864923)
chr5 (202-396)||(23772934-23773124)
chr5 (404-453)||(28864634-28864683)
chr5 (118-184)||(42742397-42742464)
chr5 (118-181)||(35847052-35847117)
[»] chr4 (5 HSPs)
chr4 (202-439)||(24745456-24745695)
chr4 (308-439)||(24752933-24753065)
chr4 (220-327)||(24753074-24753181)
chr4 (118-181)||(26500337-26500401)
chr4 (122-180)||(37707421-37707480)
[»] chr2 (4 HSPs)
chr2 (229-449)||(14886860-14887079)
chr2 (220-442)||(26585719-26585949)
chr2 (270-396)||(18675624-18675750)
chr2 (118-181)||(41958188-41958252)
[»] chr3 (1 HSPs)
chr3 (118-180)||(45181550-45181613)


Alignment Details
Target: chr6 (Bit Score: 139; Significance: 1e-72; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 220 - 449
Target Start/End: Complemental strand, 33987044 - 33986814
Alignment:
Q  220 atatgaagaattgtttcaggcttttagatatggttatgaatcacatcttcccaaattatgtatttgtatatcttgaattccttcatggtttcttcttttt 319  Q
    |||||||||||||||| ||||||| || | | || |||||||| || ||||| |||| ||||||||||||||||||||| |||  |||||||||||||||    
T  33987044 atatgaagaattgtttaaggctttcaggtttagtcatgaatcatattttcccgaattttgtatttgtatatcttgaattgctttgtggtttcttcttttt 33986945  T
Q  320 aatctcaacgttaacttcaaattatactatttcattttttaaaaaagattattagcttcaagaatacatattcaact----ttcaattattgattattta 415  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    ||||   ||||||||||||    
T  33986944 aatctcaatgttaacttcaaattatactatttcattttttaagaaagattattagcttcaagaatacatattcaactaaacttca---attgattattta 33986848  T
Q  416 caaatattgtccaagtatatttatctgggcatgt 449  Q
    |||||||||||| |||||||||||||||||||||    
T  33986847 caaatattgtcccagtatatttatctgggcatgt 33986814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 296 - 449
Target Start/End: Complemental strand, 11074701 - 11074558
Alignment:
Q  296 attccttcatggtttcttctttttaatctcaacgttaacttcaaattatactatttcattttttaaaaaagattattagcttcaagaatacatattcaac 395  Q
    ||||||||||| ||||||||||||||||| ||  ||||||| ||||||||||||||     ||||| |||||||      |||||||||||||||||| |    
T  11074701 attccttcatgctttcttctttttaatcttaatattaactttaaattatactattt-----tttaagaaagatt------ttcaagaatacatattcagc 11074613  T
Q  396 t----ttcaattattgattatttacaaatattgtccaagtatatttatctgggcatgt 449  Q
    |    |||||||   ||||||||||||||||||||| |||||||||||||| ||||||    
T  11074612 taaacttcaatt---gattatttacaaatattgtcctagtatatttatctgcgcatgt 11074558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 180
Target Start/End: Original strand, 7546512 - 7546554
Alignment:
Q  138 aaaaaaggcaccctttaactcacgaatcaccagagcagacacc 180  Q
    ||||||||||||| | |||||||||| ||||||||||||||||    
T  7546512 aaaaaaggcacccctcaactcacgaaccaccagagcagacacc 7546554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 128; Significance: 5e-66; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 220 - 395
Target Start/End: Original strand, 44719862 - 44720037
Alignment:
Q  220 atatgaagaattgtttcaggcttttagatatggttatgaatcacatcttcccaaattatgtatttgtatatcttgaattccttcatggtttcttcttttt 319  Q
    ||||||| |||||||||| |||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  44719862 atatgaaaaattgtttcaagcttttagatctggttatgaatcacattttcccaaattttgtatttgtatatcttgaattccttcatagtttcttcttttt 44719961  T
Q  320 aatctcaacgttaacttcaaattatactatttcattttttaaaaaagattattagcttcaagaatacatattcaac 395  Q
    |||||| | ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||  |||||||    
T  44719962 aatctcgatgttaacttcaaattatactatttcattttataagaaagattattagcttcaagaataccaattcaac 44720037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 220 - 439
Target Start/End: Original strand, 11060115 - 11060335
Alignment:
Q  220 atatgaagaattgtttcaggcttttagatatggttatgaatcacatcttcccaaattatgtatttgtatatcttgaattccttcatggtttcttcttttt 319  Q
    |||| ||||||| |||||| |||| |||| |||||||||||||||| ||  |||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  11060115 atatcaagaattatttcagactttcagatctggttatgaatcacattttttcaaattttgtatttgtatttcttgaattccttcatggtttcttcttttt 11060214  T
Q  320 aatctcaacgttaacttcaaattatactattt-cattttttaaaaaagattattagcttcaagaatacatattcaact----ttcaattattgattattt 414  Q
    |||||||| |||||||||||||||||||||||  ||||||||| ||||||| ||| |||| |||||||||||||||||    ||||   |||||||||||    
T  11060215 aatctcaaggttaacttcaaattatactatttaaattttttaagaaagattgttatcttc-agaatacatattcaactaaacttca---attgattattt 11060310  T
Q  415 acaaatattgtccaagtatatttat 439  Q
    ||||||||||||| | |||||||||    
T  11060311 acaaatattgtcccaatatatttat 11060335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 220 - 440
Target Start/End: Original strand, 1408145 - 1408368
Alignment:
Q  220 atatgaagaattgtttcaggcttttagatat-ggttatgaatcacatcttcccaaa-ttatgtatttgtatatcttgaattccttcatggtttcttcttt 317  Q
    |||||||||||| ||||| ||||| || | | ||||||||||||||| |||||||| || ||||||| |||||||| ||||||||||| || | ||||||    
T  1408145 atatgaagaattttttcaagctttcaggttttggttatgaatcacattttcccaaaattctgtatttttatatcttaaattccttcattgtcttttcttt 1408244  T
Q  318 ttaatctcaacgttaacttcaaattatactatttcattttttaaaaaagattattagcttcaagaatacatattcaactttcaatt--attgattattta 415  Q
    ||| |||||| ||||||||||||||||   |||||||||||||  ||||||||||||||| | ||||||||||||||| |  ||||  ||||||||||||    
T  1408245 ttattctcaatgttaacttcaaattatgtcatttcattttttatgaaagattattagctttatgaatacatattcaac-taaaattcaattgattattta 1408343  T
Q  416 caaatattgtccaagtatatttatc 440  Q
    |||| ||| ||| ||||||||||||    
T  1408344 caaacattatcctagtatatttatc 1408368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 283 - 376
Target Start/End: Original strand, 36395702 - 36395795
Alignment:
Q  283 ttgtatatcttgaattccttcatggtttcttctttttaatctcaacgttaacttcaaattatactatttcattttttaaaaaagattattagct 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||| ||||||||||||||    
T  36395702 ttgtatatcttgaattccttcatggtttcttctttttaatctcaatgttaacttcaaattatactcattcattttttaagaaagattattagct 36395795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 127; Significance: 2e-65; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 250 - 441
Target Start/End: Original strand, 31074535 - 31074727
Alignment:
Q  250 tggttatgaatcacatcttcccaaattatgtatttgtatatcttgaattccttcatggtttcttctttttaatctcaacgttaacttcaaattatactat 349  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |    
T  31074535 tggttatgaatcacattttcccaaattttgtatttgtatatcttgaattccttcatggtttcttctttataatctcgacgttaacttcaaattatactgt 31074634  T
Q  350 ttcattttttaaaaaagattattagcttcaagaatacatattcaactttcaatt--attgattatttacaaatattgtccaagtatatttatct 441  Q
    ||| |||||||| ||||||||||||||||||||||||||||||||| |  | ||  ||||||||||||||| |||||||| |||||||||||||    
T  31074635 ttcgttttttaagaaagattattagcttcaagaatacatattcaac-taaacttgaattgattatttacaactattgtcctagtatatttatct 31074727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 220 - 396
Target Start/End: Complemental strand, 9626100 - 9625924
Alignment:
Q  220 atatgaagaattgtttcaggcttttagatatggttatgaatcacatcttcccaaattatgtatttgtatatcttgaattccttcatggtttcttcttttt 319  Q
    ||||||||||| |||||||||||| || |||||||||||||||||| ||  |||||| |||||||||||||||||||||||| |||||||||||||||||    
T  9626100 atatgaagaatcgtttcaggctttcaggtatggttatgaatcacattttttcaaattttgtatttgtatatcttgaattcctccatggtttcttcttttt 9626001  T
Q  320 aatctcaacgttaacttcaaattatactatttcattttttaaaaaagattattagcttcaagaatacatattcaact 396  Q
    ||||| || ||||||||||||||||| | ||||||||||||| ||| ||||||||||| ||||||||||||||||||    
T  9626000 aatcttaatgttaacttcaaattatattgtttcattttttaagaaaaattattagctttaagaatacatattcaact 9625924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 220 - 439
Target Start/End: Original strand, 28525276 - 28525493
Alignment:
Q  220 atatgaagaattgtttcaggcttttagatatggttatgaatcacatcttcccaaattatgtatttgtatatcttgaattccttcatggtttcttcttttt 319  Q
    |||||||||||||||||||| ||| || | | |||||||||||||| ||  |||||| |||||    |||| |||||||||||||| |||||||||||||    
T  28525276 atatgaagaattgtttcaggttttcaggtctagttatgaatcacatttttgcaaattctgtat----atatattgaattccttcatagtttcttcttttt 28525371  T
Q  320 aatctcaacgttaacttcaaattatactatttca-ttttttaaaaaagattattagcttcaagaatacatattcaactttcaatt---attgattattta 415  Q
    ||||| || ||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||  | ||||   ||||||||||||    
T  28525372 aatcttaatgttaacttcaaattatactatttcatttttttaagaaagattattagtttcaagaatacatattcaac--taaatttcaattgattattta 28525469  T
Q  416 caaatattgtccaagtatatttat 439  Q
    |||||||||||| | |||||||||    
T  28525470 caaatattgtcctaatatatttat 28525493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 220 - 449
Target Start/End: Original strand, 28005840 - 28006052
Alignment:
Q  220 atatgaagaattgtttcaggcttttagatatggttatgaatcacatcttcccaaattatgtatttgtatatcttgaattccttcatggtttcttcttttt 319  Q
    ||||||||||||||||||||||||||  | | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||       
T  28005840 atatgaagaattgtttcaggcttttaagtctagttatgaatcacattttcccaaattatgtatttgtatatcttgaattccttcatggtttcttctt--- 28005936  T
Q  320 aatctcaacgttaacttcaaattatactatttcattttttaaaaaagattattagcttcaagaatacatattcaact----ttcaattattgattattta 415  Q
                   ||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||    ||||   ||||||||||||    
T  28005937 ---------------ttcaaattatactattttattttttaagaaagattattagcttcaaaaatacatattcaactaaacttca---attgattattta 28006018  T
Q  416 caaatattgtccaagtatatttatctgggcatgt 449  Q
    ||||||||||||   ||||||||| || ||||||    
T  28006019 caaatattgtcctgatatatttatatgagcatgt 28006052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 220 - 449
Target Start/End: Original strand, 28063143 - 28063355
Alignment:
Q  220 atatgaagaattgtttcaggcttttagatatggttatgaatcacatcttcccaaattatgtatttgtatatcttgaattccttcatggtttcttcttttt 319  Q
    ||||||||||||||||||||||||||  | | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||       
T  28063143 atatgaagaattgtttcaggcttttaagtctagttatgaatcacattttcccaaattatgtatttgtatatcttgaattccttcatggtttcttctt--- 28063239  T
Q  320 aatctcaacgttaacttcaaattatactatttcattttttaaaaaagattattagcttcaagaatacatattcaact----ttcaattattgattattta 415  Q
                   ||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||    ||||   ||||||||||||    
T  28063240 ---------------ttcaaattatactattttattttttaagaaagattattagcttcaaaaatacatattcaactaaacttca---attgattattta 28063321  T
Q  416 caaatattgtccaagtatatttatctgggcatgt 449  Q
    ||||||||||||   ||||||||| || ||||||    
T  28063322 caaatattgtcctgatatatttatatgagcatgt 28063355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 196 - 319
Target Start/End: Original strand, 36033158 - 36033277
Alignment:
Q  196 attttatatcaattctagcaatatatatgaagaattgtttcaggcttttagatatggttatgaatcacatcttcccaaattatgtatttgtatatcttga 295  Q
    ||||||||||||||||||||||||    |||||||||||||| ||||| || | |||||||||||||||| ||| |||||||||||||||||||||||||    
T  36033158 attttatatcaattctagcaatat----gaagaattgtttcaagctttcaggtctggttatgaatcacattttctcaaattatgtatttgtatatcttga 36033253  T
Q  296 attccttcatggtttcttcttttt 319  Q
    ||||||||||||||||||||||||    
T  36033254 attccttcatggtttcttcttttt 36033277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 184
Target Start/End: Complemental strand, 1579157 - 1579090
Alignment:
Q  118 cacaagacttccgacacaagaaaaa-aggcaccctttaactcacgaatcaccagagcagacacctaaa 184  Q
    ||||||||| || ||||||| |||| ||||| || | |||||||||| ||||||||||||||||||||    
T  1579157 cacaagactcccaacacaagtaaaagaggcatccctcaactcacgaaccaccagagcagacacctaaa 1579090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 181
Target Start/End: Complemental strand, 38387937 - 38387873
Alignment:
Q  118 cacaagacttccgacacaaga-aaaaaggcaccctttaactcacgaatcaccagagcagacacct 181  Q
    ||||||||| |||||| |||  |||||||||||| | |||||||||| |||||||||| ||||||    
T  38387937 cacaagactcccgacataagtcaaaaaggcacccctcaactcacgaaccaccagagcaaacacct 38387873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 220 - 449
Target Start/End: Complemental strand, 330642 - 330412
Alignment:
Q  220 atatgaagaattgtttcaggcttttagatatggttatgaatcacatcttcccaaattatgtatttgtatatcttgaattccttcatggtttcttcttttt 319  Q
    |||||||||||||||| ||||||||||   ||| || ||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  330642 atatgaagaattgtttaaggcttttaggcctggctacgaatcacattttcccaaattatgtatttgtatatcttgaattcgtacatggtttcttcttttt 330543  T
Q  320 aatctcaacgttaacttcaaattatactatttcattttttaaaaaagattattagcttcaagaatacatattcaact----ttcaattattgattattta 415  Q
    ||| |||| |||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||    ||||    |||||||||||    
T  330542 aatttcaatgttaacttcaaattatactatttcattttttaaggaatattattagcttcaagaatacatattcaactaaacttca---gttgattattta 330446  T
Q  416 caaatattgtccaagtatatttatctgggcatgt 449  Q
    |||||||||||| | |||||||| ||| ||||||    
T  330445 caaatattgtcctattatatttaactgagcatgt 330412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 122; Significance: 2e-62; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 202 - 386
Target Start/End: Complemental strand, 28864923 - 28864741
Alignment:
Q  202 tatcaattctagcaatatatatgaagaattgtttcaggcttttagatatggttatgaatcacatcttcccaaattatgtatttgtatatcttgaattcct 301  Q
    ||||||||||||||||||||  |||||||||||| ||||||| || | || ||||||||| ||| ||||||||||||||||||||||||||||||||| |    
T  28864923 tatcaattctagcaatatat--gaagaattgttttaggctttcaggtctgattatgaatcgcattttcccaaattatgtatttgtatatcttgaattcgt 28864826  T
Q  302 tcatggtttcttctttttaatctcaacgttaacttcaaattatactatttcattttttaaaaaagattattagcttcaagaatac 386  Q
    || |||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  28864825 tcttggtttcttctttttaatttcaatgttaacttcaaatcatactatttcattttttaaaagagattattagcttcaagaatac 28864741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 202 - 396
Target Start/End: Complemental strand, 23773124 - 23772934
Alignment:
Q  202 tatcaattctagcaatatatatgaagaattgtttcaggcttttagatatggttatgaatcacatcttcccaaattatgtatttgtatatcttgaattcct 301  Q
    ||||||||||||||||||    |||||||| ||| ||| |||  | | |||||||||||||||| || | ||||| ||||||||||||||||||||| ||    
T  23773124 tatcaattctagcaatat----gaagaattattttaggttttgtggtctggttatgaatcacatttttctaaattctgtatttgtatatcttgaatttct 23773029  T
Q  302 tcatggtttcttctttttaatctcaacgttaacttcaaattatactatttcattttttaaaaaagattattagcttcaagaatacatattcaact 396  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||    
T  23773028 tcatggtttcttctttttaatctcaatgttaacttcaaattatactatttcattttttaagaaagattatttgcttcaaaaatacatattcaact 23772934  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 404 - 453
Target Start/End: Complemental strand, 28864683 - 28864634
Alignment:
Q  404 attgattatttacaaatattgtccaagtatatttatctgggcatgttcat 453  Q
    |||||||||||||||||||||||| | ||||||||| || ||||||||||    
T  28864683 attgattatttacaaatattgtcctattatatttatatgagcatgttcat 28864634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 184
Target Start/End: Original strand, 42742397 - 42742464
Alignment:
Q  118 cacaagacttccgacacaaga-aaaaaggcaccctttaactcacgaatcaccagagcagacacctaaa 184  Q
    ||||||||| ||||||||||  ||||||||||||   ||| |||||| ||||||||||||||||||||    
T  42742397 cacaagactcccgacacaagtcaaaaaggcaccccacaacccacgaaccaccagagcagacacctaaa 42742464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 181
Target Start/End: Complemental strand, 35847117 - 35847052
Alignment:
Q  118 cacaagacttccgacacaag--aaaaaaggcaccctttaactcacgaatcaccagagcagacacct 181  Q
    ||||| ||| ||||||||||  ||||||||||||| | ||||||| || |||||||||||||||||    
T  35847117 cacaaaactcccgacacaagtcaaaaaaggcacccatcaactcacaaaccaccagagcagacacct 35847052  T

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Target: chr4 (Bit Score: 98; Significance: 4e-48; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 202 - 439
Target Start/End: Complemental strand, 24745695 - 24745456
Alignment:
Q  202 tatcaattctagcaatatatatgaagaattgtttcaggcttttagatatggttatgaatcacatcttcccaaattatgtatttgtatat--cttgaat-- 297  Q
    ||||||||||||||||||    |||||||||| ||||||||| || | | |||||||||||||| || ||||||| |||||||||||||  |||||||      
T  24745695 tatcaattctagcaatat----gaagaattgtctcaggctttaaggtctagttatgaatcacatttttccaaattctgtatttgtatatatcttgaataa 24745600  T
Q  298 -tccttcatggtttcttctttttaatctcaacgttaacttcaaattatactatttcattttttaaaaaagattattagcttcaagaatacatattcaact 396  Q
     ||||| |||||||||||||||||||||||| ||||| || ||||| |||||||||||||||||| ||||| ||||||||||||||||| ||||||||||    
T  24745599 ttcctttatggtttcttctttttaatctcaatgttaattttaaattgtactatttcattttttaagaaagactattagcttcaagaatatatattcaact 24745500  T
Q  397 ----ttcaattattgattatttacaaatattgtccaagtatatttat 439  Q
        ||||   |||||||||||||||||||||||  ||| |||||||    
T  24745499 aaacttca---attgattatttacaaatattgtcatagtctatttat 24745456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 308 - 439
Target Start/End: Complemental strand, 24753065 - 24752933
Alignment:
Q  308 tttcttctttttaatctcaacgttaacttcaaattatactatttcattttttaaaaaagattattagcttcaagaatacatattcaact----ttcaatt 403  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||| ||||||||||    |||||||    
T  24753065 tttcttctttttaatctcaatgttaacttcaaattatactatttcattttctaagaaagattattagcttctagaatagatattcaactaaagttcaatt 24752966  T
Q  404 attgattatttacaaatattgtccaagtatatttat 439  Q
    |   |||||||||||||||||||| ||| |||||||    
T  24752965 a---attatttacaaatattgtcctagtctatttat 24752933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 220 - 327
Target Start/End: Complemental strand, 24753181 - 24753074
Alignment:
Q  220 atatgaagaattgtttcaggcttttagatatggttatgaatcacatcttcccaaattatgtatttgtatatcttgaattccttcatggtttcttcttttt 319  Q
    ||||||||||||||||   ||||| || | | |||||||||||||| || ||||||| ||||||||| ||||||||||||||| ||| ||||||||||||    
T  24753181 atatgaagaattgttttgagctttgaggtctagttatgaatcacatttttccaaattctgtatttgtttatcttgaattcctttatgatttcttcttttt 24753082  T
Q  320 aatctcaa 327  Q
    ||||||||    
T  24753081 aatctcaa 24753074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 118 - 181
Target Start/End: Original strand, 26500337 - 26500401
Alignment:
Q  118 cacaagacttccgacacaaga-aaaaaggcaccctttaactcacgaatcaccagagcagacacct 181  Q
    ||||||||||||||||||||  |||||||||||| | |||||||||| ||| |||||| ||||||    
T  26500337 cacaagacttccgacacaagtcaaaaaggcacccctcaactcacgaaccactagagcatacacct 26500401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 180
Target Start/End: Original strand, 37707421 - 37707480
Alignment:
Q  122 agacttccgacaca-agaaaaaaggcaccctttaactcacgaatcaccagagcagacacc 180  Q
    ||||| |||||||| || |||||||||||| | |||||||||| ||||||||||||||||    
T  37707421 agactcccgacacatagcaaaaaggcacccctcaactcacgaaccaccagagcagacacc 37707480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 3e-46; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 229 - 449
Target Start/End: Original strand, 14886860 - 14887079
Alignment:
Q  229 attgtttcaggcttttagatatggttatgaatcacatcttcccaaattatgtatttgtatatcttgaattccttcatggtttcttctttttaatctcaac 328  Q
    ||||||||| ||||| || | ||||| |||||||||| |||||||||| |||||||||||||||| |||||||||||  ||||| ||||||||||||||     
T  14886860 attgtttcaagctttcaggtctggttgtgaatcacattttcccaaattctgtatttgtatatcttaaattccttcataatttctcctttttaatctcaat 14886959  T
Q  329 gttaacttcaaattatactatttcattttttaaaaaagattattagcttcaagaatacatattcaact----ttcaattattgattatttacaaatattg 424  Q
    ||||||||||||||| ||||||| ||||||||| ||| |||||||| |||||||||||  ||||||||    ||||   | |||||||||||||||||||    
T  14886960 gttaacttcaaattacactattttattttttaagaaatattattagtttcaagaatac--attcaactaagcttca---aatgattatttacaaatattg 14887054  T
Q  425 tccaagtatatttatctgggcatgt 449  Q
    ||  || ||||||||||| ||||||    
T  14887055 tcttagaatatttatctgagcatgt 14887079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 220 - 442
Target Start/End: Complemental strand, 26585949 - 26585719
Alignment:
Q  220 atatgaagaattgtttcaggcttttagatatggttatgaatcacatcttcccaaattatgtatttgtata------tcttgaattccttcatggtttctt 313  Q
    |||||||||||||||||||||||  || | || ||||||||||||| || |||||||||||||||| ||       ||||||||||| ||||||||||||    
T  26585949 atatgaagaattgtttcaggcttccaggtttgattatgaatcacatttttccaaattatgtatttgcattagcatttcttgaattccgtcatggtttctt 26585850  T
Q  314 ctttttaatctcaacgttaacttcaaattatactatttca-ttttttaaaaaagattattagcttcaagaatacatattcaact----ttcaattattga 408  Q
    |||||||||||||| || ||||| |||||||||||||| | |||||||| ||||||||||| ||| ||||||||||||||||||    ||||    ||||    
T  26585849 ctttttaatctcaatgtcaactttaaattatactattttatttttttaagaaagattattatcttaaagaatacatattcaactaaacttca---cttga 26585753  T
Q  409 ttatttacaaatattgtccaagtatatttatctg 442  Q
    ||||||| ||||||||||| ||||||||||||||    
T  26585752 ttatttataaatattgtcctagtatatttatctg 26585719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 270 - 396
Target Start/End: Original strand, 18675624 - 18675750
Alignment:
Q  270 ccaaattatgtatttgtatatcttgaattccttcatggtttcttctttttaatctcaacgttaacttcaaattatactatttcattttttaaaaaagatt 369  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||||  |||||||||||||||| |||| |||||||    
T  18675624 ccaaattctgtatttgtataccttgaattccttcatggtttcttctttttaatctcaatattaacttcaggttatactatttcatttcttaagaaagatt 18675723  T
Q  370 attagcttcaagaatacatattcaact 396  Q
    |||||||| || |||||||||||||||    
T  18675724 attagctttaaaaatacatattcaact 18675750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 118 - 181
Target Start/End: Complemental strand, 41958252 - 41958188
Alignment:
Q  118 cacaagacttccgacacaaga-aaaaaggcaccctttaactcacgaatcaccagagcagacacct 181  Q
    ||||||||| | ||||||||  |||||||||||||| ||||||| || |||||||||||||||||    
T  41958252 cacaagactcctgacacaagtcaaaaaggcacccttcaactcacaaaccaccagagcagacacct 41958188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 180
Target Start/End: Complemental strand, 45181613 - 45181550
Alignment:
Q  118 cacaagacttccgacacaaga-aaaaaggcaccctttaactcacgaatcaccagagcagacacc 180  Q
    ||||||||| |||||| |||  |||||||||||| | |||||||||| ||||||||||||||||    
T  45181613 cacaagactcccgacaaaagtcaaaaaggcacccctcaactcacgaaccaccagagcagacacc 45181550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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