View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_high_50 (Length: 453)
Name: NF0928_high_50
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_high_50 |
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Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 120 - 440
Target Start/End: Complemental strand, 7679176 - 7678860
Alignment:
| Q |
120 |
acataaaaagttcattcacacgttaaaatcaacaggaaaaataaaaagaagggtttgagtgg------ataacatagttgcttaaatagcttctagatta |
213 |
Q |
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| T |
7679176 |
acataaaaagttcattcacacattaaaatcaacaggaaaaataaaaagaagggtttgagtggtcgtggataacatagttgcttaaatagcctctagatca |
7679077 |
T |
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| Q |
214 |
ctaaattaatgcatgcgctgattgcttgttagacaagttttttactctttagacatgattttgtacgatttgaatacaaactaattattattattattag |
313 |
Q |
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| T |
7679076 |
ctaaattaatgcatgcgctgattgcttgttagacaaattttttactctttagacatggttttgtacgatttaaatacaaactaattatt------attag |
7678983 |
T |
|
| Q |
314 |
atgaaaaaattagcccacatcatcagctatgtgtgagacagacaatacaagaagggagattattattactgtaacaatgacaaacaatgcttccccagta |
413 |
Q |
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| T |
7678982 |
atgaaaaaattagcccgcatcatcagctatgtgtg----agacaatacaagaagggagattaatattactgtaacaatgaccaacaatgcttccccagta |
7678887 |
T |
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| Q |
414 |
tgagggaaaatgttcttgactagtttc |
440 |
Q |
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| T |
7678886 |
tgagggacaatgttcttgactagtttc |
7678860 |
T |
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