View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_high_52 (Length: 448)
Name: NF0928_high_52
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_high_52 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 210 - 435
Target Start/End: Original strand, 28109009 - 28109234
Alignment:
| Q |
210 |
aaagtcataagcaatctcaatcagttttggctcagttccctttaaccctccaaaacagatcccaaatggcattccttgcctatcataccctgctggtaca |
309 |
Q |
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| T |
28109009 |
aaagtcataagcaatctcaatcagttttggctcagttccctttaaccctccaaaacagatcccaaatggcattccttgcctatcataccctgctggtaca |
28109108 |
T |
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| Q |
310 |
gtgattgcaggataccctccaattgacagcattgaagtagcatcagaacctatggccaacactgcatccaattgattcttcttaatcagcctctcaaccc |
409 |
Q |
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| T |
28109109 |
gtgattgcaggataccctccaattgacagcattgaagtagcatcagaacctatggccaacactgcatccaattgattcttcttaatcagcctctcaaccc |
28109208 |
T |
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| Q |
410 |
cattttttgacaattgctccatcttc |
435 |
Q |
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|||||||||||||||||||||||||| |
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| T |
28109209 |
cattttttgacaattgctccatcttc |
28109234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 121 - 432
Target Start/End: Original strand, 28127440 - 28127757
Alignment:
| Q |
121 |
agtcaagtc-aggtcttaatgttatccttaaatttcttcatgtgtgaatgaaaagtgag-------ggggtggcttccttgcccttgtagattgctcaaa |
212 |
Q |
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| T |
28127440 |
agtcaagtctaggtcctaatattatccttaaatttcttc--gtatgaatgaaaagcgactaagcgaggggtggcttccttgccctggtagcttgctcaaa |
28127537 |
T |
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| Q |
213 |
gtcataagcaatctcaatcagttttggctcagttccctttaaccctccaaaacagatcccaaatggcattccttgcctatcataccctgctggtacagtg |
312 |
Q |
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| T |
28127538 |
atcataagcaatctcaatcagtttcggctcagttccctttaaccctccaaaacagattccaaatggcatcccttgcttatcatatccagctgggacagtg |
28127637 |
T |
|
| Q |
313 |
attgcaggataccctccaattgacagcattgaagtagcatcagaacctatggccaacactgcatccaattgattcttcttaatcagcctctcaaccccat |
412 |
Q |
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||||| |||||||||||||||| || ||||| || ||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||| ||||| |
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| T |
28127638 |
attgctggataccctccaattgccaacattggagaagcatcagagcctatggccaacactgcatccaattgattcttctttatcaaactctcaaacccat |
28127737 |
T |
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| Q |
413 |
tttttgacaattgctccatc |
432 |
Q |
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|||||||||||| |||||| |
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| T |
28127738 |
cttttgacaattgatccatc |
28127757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 30 - 151
Target Start/End: Original strand, 28108890 - 28109011
Alignment:
| Q |
30 |
cagatcagtactatgatggcaaaatataaggtaaaagatatacatcaaccataattatatatgtgatattctacttgtattaatcaaatttagtcaagtc |
129 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
28108890 |
cagatcaatactatgatggcaaaatataaggtaaaagatatacatcaaccataattatatatgtgatattctacttgtattgatcaaatttagtcaagtc |
28108989 |
T |
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| Q |
130 |
aggtcttaatgttatccttaaa |
151 |
Q |
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|||||||||||||||||||||| |
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| T |
28108990 |
aggtcttaatgttatccttaaa |
28109011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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