View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0928_high_59 (Length: 420)
Name: NF0928_high_59
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_high_59 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 28 - 410
Target Start/End: Complemental strand, 41062765 - 41062383
Alignment:
| Q |
28 |
caaagagcaaattacttcacatttgtaatgttaatgaaaatgtctccacctgacacaagactcgaaggaaacgtgacattcttaatgccaaatgatcgaa |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41062765 |
caaagagcaaattacttcacatttgtaatgttaatcaaaatgtctccacctgacacaagactcgaaggaaacgtgacattcttaatgccaaatgatcgaa |
41062666 |
T |
|
| Q |
128 |
tgctcgcaaatgtgacgcttcaagaagaatctgtttctgaattcttgttaagacattcaattccatcacctctactctttgacaccttgaaacaatttcc |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41062665 |
tgctcgcaaatgtgacgcttcaagaagaatctgtttctaaattcttgttaagacattcaattccatcacctctactctttgacaccttgaaacaatttcc |
41062566 |
T |
|
| Q |
228 |
cagtggcacaaccgttcctagtttattgccaaattgcatgatgagaatatctaacaatggtaggaagaattttgttgtcaacaatgtaaagattattagc |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41062565 |
tagtggcacaaccgttcctagtttattgccaaattgcataatgagaatatctaacaatggtaggaagaattttgttgtcaacaatgtaaagattattagc |
41062466 |
T |
|
| Q |
328 |
ccaaacatatgtgtgtctggatcttcaattcgatgtcatggtatagatggggtcctgtcacaaacatgtacattagagaataa |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
41062465 |
ccaaacatatgtgtgtctggatcttcaattcgatgtcatggtatagatggggtcttgtcacaaacatgtacattagagaataa |
41062383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1438 times since January 2019
Visitors: 6712