View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0928_high_6 (Length: 897)

Name: NF0928_high_6
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0928_high_6
NF0928_high_6
[»] chr4 (7 HSPs)
chr4 (566-889)||(2627590-2627916)
chr4 (243-533)||(2627288-2627584)
chr4 (29-237)||(2627031-2627239)
chr4 (434-486)||(2557924-2557976)
chr4 (715-820)||(2553486-2553591)
chr4 (188-237)||(13949908-13949957)
chr4 (93-221)||(2465999-2466127)
[»] chr8 (2 HSPs)
chr8 (429-564)||(39537878-39538017)
chr8 (178-232)||(6509372-6509426)
[»] chr6 (1 HSPs)
chr6 (193-227)||(22691594-22691628)
[»] chr7 (1 HSPs)
chr7 (190-227)||(46825057-46825094)
[»] chr2 (1 HSPs)
chr2 (196-237)||(11513863-11513904)
[»] chr1 (1 HSPs)
chr1 (196-237)||(30371113-30371154)


Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-135; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 566 - 889
Target Start/End: Original strand, 2627590 - 2627916
Alignment:
Q  566 tttgttgtgattaaatgtatcactaacgtttcgaagacnnnnnnngaagtccaattatttcagcaataatgtatgccatgagcttctccaaccaaaattt 665  Q
    ||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2627590 tttgttgtgattaaatgtatcactaacgtttcgaagactttttttgaagtccaattatttcagcaataatgtatgccatgagcttctccaaacaaaattt 2627689  T
Q  666 ttggtctgctgctcaaatatga-atttcttgttatatgccagcaagagtaattcagtttctcttgagactaatggctacacaacttcagcaattttgaag 764  Q
    |||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  2627690 ttggtctgctgctcaaatatgatatttcttgttatatgctagcaa-agtaattcagtttctcttgagactaatgcctacacaacttcagcaattttgaag 2627788  T
Q  765 gcatatcacataaatta---gagaacaaaattgaaggattgttattcaacatccagaaagaataaaaggtcgtcctagaaaatgggagctacgatgaggt 861  Q
    ||||||||||| |||||   |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||    
T  2627789 gcatatcacatgaattattagagaacaaaattgaaggaatgttattcaacatccagaaagaataaaaggtcgtcgtagaaaattggagctaccatgaggt 2627888  T
Q  862 tttctgtgtaacatcaaccccctatgat 889  Q
    ||||||||||||||||||||||||||||    
T  2627889 tttctgtgtaacatcaaccccctatgat 2627916  T

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Target: chr4; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 243 - 533
Target Start/End: Original strand, 2627288 - 2627584
Alignment:
Q  243 tccataacctcttctaaacactctaccaagtacttatttcagtaaataagctgatcaaagtaggccttcaagcatcaactaat----agggggtcaaggc 338  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||    |||||||||| ||    
T  2627288 tccataacctcttctaaacactctaccaagtacttatttcagtaaataagctgatcaaaataggcctttaagcatcaactaattaatagggggtcaatgc 2627387  T
Q  339 ctatcaaagaattctgcataggaaatagcaatttcccaacttactcatttcttaggatgtattaaacaggta--annnnnnnatagttaagtcatatttg 436  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||          ||||||||||||||||||    
T  2627388 ctatcaaagaattctgcatagcaaatagcaatttcccaacttactcatttcttaggatgtattaaacaagtactttttttttatagttaagtcatatttg 2627487  T
Q  437 gttctactaacttcaaattttgaaggttaaaatttggttaatttttaatgaaatgttgtgactactagattaaatgagaaaataagttcctaaacat 533  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2627488 gttctactaacttcaaattttgaaggttaaaatttggttaatttttaatgaaatgttgtgactactagattaaatgagaaaataagttcctaaacat 2627584  T

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Target: chr4; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 29 - 237
Target Start/End: Original strand, 2627031 - 2627239
Alignment:
Q  29 aaagtcttttaccttctgtttggatgaatgttgcacttcaacgatgttcagaatttagaactacattcttccttttatttaggctctgttggggtaaata 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  2627031 aaagtcttttaccttctgtttggatgaatgttgcacttcaacgatgttcagaatttagaactacattcttccttttatttaggctctgttggggtaaaca 2627130  T
Q  129 agttaatgaagcgcttatagtataagcgctttttatataagtgtgttatataatttatatctaaaacaagataaaataaattcaaattgttttcatatac 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  2627131 agttaatgaagcgcttatagtataagcgctttttatataagtgtgttatataatttatatctaaaacaagataaaataaattcaaattgttttcatatat 2627230  T
Q  229 gctaaaagt 237  Q
    |||||||||    
T  2627231 gctaaaagt 2627239  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 434 - 486
Target Start/End: Complemental strand, 2557976 - 2557924
Alignment:
Q  434 ttggttctactaacttcaaattttgaaggttaaaatttggttaatttttaatg 486  Q
    |||||||||||||||| || ||||||| ||||||||||||||| |||||||||    
T  2557976 ttggttctactaactttaagttttgaatgttaaaatttggttagtttttaatg 2557924  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 715 - 820
Target Start/End: Complemental strand, 2553591 - 2553486
Alignment:
Q  715 attcagtttctcttgagactaatggctacacaacttcagcaattttgaaggcatatcacataaattagagaacaaaattgaaggattgttattcaacatc 814  Q
    ||||| |||||| | |||||||||||||| ||||||| | |   | |||| || |||||||||| |  ||||| |||| |||||| ||||||||||||||    
T  2553591 attcaatttctcataagactaatggctacgcaacttctgtatcctagaagccaaatcacataaactttagaacgaaatagaaggagtgttattcaacatc 2553492  T
Q  815 cagaaa 820  Q
    ||||||    
T  2553491 cagaaa 2553486  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 237
Target Start/End: Complemental strand, 13949957 - 13949908
Alignment:
Q  188 tctaaaacaagataaaataaattcaaattgttttcatatacgctaaaagt 237  Q
    |||| |||||||||||||||| |||||||||||||||||| |||| ||||    
T  13949957 tctataacaagataaaataaagtcaaattgttttcatataagctataagt 13949908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 221
Target Start/End: Complemental strand, 2466127 - 2465999
Alignment:
Q  93 attcttccttttatttaggctctgttggggtaaataagttaatgaagcgcttatagtataagcgctttttatataagtg-tgttatataatttatatcta 191  Q
    |||||||||| |||||||||| ||||  |||||| |  ||||| |||| | |||||| ||| |||||||||||| |||| |  | ||||| |||| ||||    
T  2466127 attcttccttgtatttaggctttgtttaggtaaaaaccttaattaagcacatatagtctaaacgctttttatattagtgcttatgtataagttat-tcta 2466029  T
Q  192 aaacaagataaaataaattcaaattgtttt 221  Q
     ||||||||||| | ||||||| |||||||    
T  2466028 taacaagataaattcaattcaatttgtttt 2465999  T

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Target: chr8 (Bit Score: 51; Significance: 9e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 429 - 564
Target Start/End: Original strand, 39537878 - 39538017
Alignment:
Q  429 catatttggttctactaacttcaaattttgaaggttaaaatttggttaatttttaatgaaatgttgtgactacta----gattaaatgagaaaataagtt 524  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||  ||||||| |||  ||||||||||||    || |||| | |||||  ||||    
T  39537878 catatttggttccactaacttcaagttttgaaggttaaaatttggttacattttaatcaaactttgtgactactacattgaataaaagtgaaaaagagtt 39537977  T
Q  525 cctaaacatggcaccggattttcattgggatagctataat 564  Q
    | ||| ||| ||||| || | |||||||||||||||||||    
T  39537978 cataagcatagcaccagaatctcattgggatagctataat 39538017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 232
Target Start/End: Complemental strand, 6509426 - 6509372
Alignment:
Q  178 ataatttatatctaaaacaagataaaataaattcaaattgttttcatatacgcta 232  Q
    |||| ||||||||| |||||||||||||||| ||||||||| || ||||| ||||    
T  6509426 ataagttatatctataacaagataaaataaagtcaaattgtatttatataagcta 6509372  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 227
Target Start/End: Complemental strand, 22691628 - 22691594
Alignment:
Q  193 aacaagataaaataaattcaaattgttttcatata 227  Q
    |||||||||| ||||||||||||||||||||||||    
T  22691628 aacaagataacataaattcaaattgttttcatata 22691594  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 227
Target Start/End: Original strand, 46825057 - 46825094
Alignment:
Q  190 taaaacaagataaaataaattcaaattgttttcatata 227  Q
    ||||| ||||||||||||| ||||||||||||||||||    
T  46825057 taaaaaaagataaaataaagtcaaattgttttcatata 46825094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 11513863 - 11513904
Alignment:
Q  196 aagataaaataaattcaaattgttttcatatacgctaaaagt 237  Q
    ||||||||||||| |||||||||||||||||| |||| ||||    
T  11513863 aagataaaataaagtcaaattgttttcatataagctataagt 11513904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 30371113 - 30371154
Alignment:
Q  196 aagataaaataaattcaaattgttttcatatacgctaaaagt 237  Q
    ||||||||||||| |||||||||||||||||| |||| ||||    
T  30371113 aagataaaataaactcaaattgttttcatataagctataagt 30371154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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