View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0928_high_60 (Length: 418)
Name: NF0928_high_60
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_high_60 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 13 - 384
Target Start/End: Complemental strand, 2060206 - 2059838
Alignment:
| Q |
13 |
aatatgaatgaacgtgacatgaagcaagcaccccagaaatcaaatttcttaatccnnnnnnngggtatgttctaaaattaccttaaagtaattatgactt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||| |
|
|
| T |
2060206 |
aatatgaatgaacgtgacatgaagcaagcaccc-agaaatcaaatttcttaatcctttttttggttatgttctaaaattacct-aaagtaattatgactt |
2060109 |
T |
|
| Q |
113 |
aaagtcaaattattaggaagaacttatgtatnnnnnnngctcaattttagggtcaaaaacatcaaaacaccttcaatcatggtggtcatcaatcaaatag |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2060108 |
caagtcaaattattaggaagaacttatgtataaaaaaagctcatttttagggtcaaaaacatcaaaacacct-caatcatggtggtcatcaatcaaatag |
2060010 |
T |
|
| Q |
213 |
caaatagttttgaaatgaaagtagattagcaatgctatttcttgcaactaatatcatctcgaaagttttgcgaataaagtttcaaccaattaagttgtgc |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2060009 |
caaatagttttgaaatgaaagtagattagcaatgctatttctcgcaactaatatcatctcgaaagtttcgcgaataaagtttcaaccaattaagttgtgc |
2059910 |
T |
|
| Q |
313 |
ctttcacggaaaacagagcaagtattgcttgtatgtggttacatgttttatacacttaagccatcgtgagag |
384 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2059909 |
ctttcacggaaaacaaagcaagtattgcttgtatgtggttacatgttttatacacttaagccattgtgagag |
2059838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 151 - 364
Target Start/End: Complemental strand, 2063833 - 2063620
Alignment:
| Q |
151 |
gctcaattttagggtcaaaaacatcaaaacaccttcaatcatggtggtcatcaatcaaatagcaaatagttttgaaatgaaagtagattagcaatgctat |
250 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2063833 |
gctcatttttagggtaaaaaacatcaaaacaccttaagtcatggtggtcatcaatcaaatagcaaatagttttgaaatgaaagtagattagcaatgctat |
2063734 |
T |
|
| Q |
251 |
ttcttgcaactaatatcatctcgaaagttttgcgaataaagtttcaaccaattaagttgtgcctttcacggaaaacagagcaagtattgcttgtatgtgg |
350 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||||||||||||| ||| |||| ||| |||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
2063733 |
ttctcgcaactaatatcatctcgaaagtttcacgaataaagtttcaacaaatgaagtagtgtctttcacgaaaaacatagcaagtattgcttgtatgtgg |
2063634 |
T |
|
| Q |
351 |
ttacatgttttata |
364 |
Q |
| |
|
||| | |||||||| |
|
|
| T |
2063633 |
ttaaacgttttata |
2063620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 114 - 243
Target Start/End: Complemental strand, 2055773 - 2055641
Alignment:
| Q |
114 |
aagtcaaattattaggaagaac-ttatgtatnnnnnnngctcaattttagggtcaaaaacatcaaaacaccttc---aatcatggtggtcatcaatcaaa |
209 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||| |||||||||||||| ||||||| ||||||| | |||||||| |||| ||||| |
|
|
| T |
2055773 |
aagtcaaattattaggaagaacgttatgtataaaagaagctcatttttagggtcaaaatcatcaaa-caccttcttcagtcatggtgatcattgatcaag |
2055675 |
T |
|
| Q |
210 |
tagcaaatagttttgaaatgaaagtagattagca |
243 |
Q |
| |
|
||||||| |||||| |||| |||||||||||||| |
|
|
| T |
2055674 |
tagcaaagagttttaaaataaaagtagattagca |
2055641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 366
Target Start/End: Original strand, 20163111 - 20163193
Alignment:
| Q |
285 |
aataaagtttcaaccaattaagttgtgcctttca-cggaaaacagagcaagtattgcttgtatgtggttacatgttttataca |
366 |
Q |
| |
|
||||||||||||| |||||||| ||| |||| ||||||||| | |||||||| |||||||||||| ||||||||||||| |
|
|
| T |
20163111 |
aataaagtttcaaacaattaagcagtgtcttttttcggaaaacatggtaagtattgtttgtatgtggttgcatgttttataca |
20163193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 366
Target Start/End: Complemental strand, 20194385 - 20194303
Alignment:
| Q |
285 |
aataaagtttcaaccaattaagttgtgcctttca-cggaaaacagagcaagtattgcttgtatgtggttacatgttttataca |
366 |
Q |
| |
|
||||||||||||| |||||||| ||| |||| ||||||||| | |||||||| |||||||||||| ||||||||||||| |
|
|
| T |
20194385 |
aataaagtttcaaacaattaagcagtgtcttttttcggaaaacatggtaagtattgtttgtatgtggttgcatgttttataca |
20194303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 366
Target Start/End: Complemental strand, 44278897 - 44278815
Alignment:
| Q |
285 |
aataaagtttcaaccaattaagttgtgcctttca-cggaaaacagagcaagtattgcttgtatgtggttacatgttttataca |
366 |
Q |
| |
|
||||||||||||| |||||||| ||| |||| ||||||||| | |||||||| |||||||||||| ||||||||||||| |
|
|
| T |
44278897 |
aataaagtttcaaacaattaagcagtgtcttttttcggaaaacatggtaagtattgtttgtatgtggttgcatgttttataca |
44278815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 508 times since January 2019
Visitors: 6717