View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0928_high_67 (Length: 399)
Name: NF0928_high_67
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_high_67 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 7 - 380
Target Start/End: Original strand, 12670214 - 12670586
Alignment:
| Q |
7 |
cctttaacattaatttagcatatgaaaaaggttttgagctatgactatatgatgaaagtaaaatgattatggagatttccacattgaacaagtctagtag |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12670214 |
cctttaacattaatttagcatatgaaaaaggttttgagctatgactatatgatgaaagtaaaatgattatggagatttccacattgaacaagtctagtag |
12670313 |
T |
|
| Q |
107 |
tacctttgacaaatttgtcttttggtttcatctttgagaccacttttttcctcactactctatttctatttcaagaaagtaagtgaaagatnnnnnnnnn |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12670314 |
tacctttgacaaatttgtcttttggtttcatctttgagacaacttttttcctcactactctatttctatttcaagaaagtaagtgaaagatagaagagaa |
12670413 |
T |
|
| Q |
207 |
nnnnnnnnngagtttttgttttggtaagataggaggaaagtgaggaaatgaagatgattataagggaagnnnnnnnnggaaagatgagtgcatgaggagg |
306 |
Q |
| |
|
|| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
12670414 |
gagagagaggaatttttgttatggtaagataggaggaaagtgaggaaatgaagatgtttataagggaag-aaaaaaaggaaagatgagtgcatgaggagg |
12670512 |
T |
|
| Q |
307 |
ctagtgggctttcccaatggacttgatgtagacaggtccaaggcccagaaagatctaaatggacctgatgatgt |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12670513 |
ctagtgggctttcccaatggacttgatgtagacaggtccaaggcccagaaagatctaaatggacctgatgatgt |
12670586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 272 times since January 2019
Visitors: 6714