View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_high_70 (Length: 397)
Name: NF0928_high_70
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_high_70 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 113 - 384
Target Start/End: Complemental strand, 19003817 - 19003546
Alignment:
| Q |
113 |
tcacaccaagaattttcacgaatcctctcactgtgaaagggaaataccacatgagccggtccagtaaaatatctccactataaaaaattataattacagt |
212 |
Q |
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| T |
19003817 |
tcacaccaagaattttcacgaatcctctcactgtgaaagggaaatacctcatgagctggtccagtaaaatatctccactataaaaaattataattacagt |
19003718 |
T |
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| Q |
213 |
ttctcttttgatacaagatgatatttctcaactctcaaaaatctatgattgaaacaaaannnnnnnnnnnntaaagaggactgctagaactctatttctc |
312 |
Q |
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| T |
19003717 |
ttctcttttgatacaagatgatatttctcaactctcaaaaatctatgattgaaacaaaactctctttctcttaaagaggactgctagaactctatttctc |
19003618 |
T |
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| Q |
313 |
actatcacttttggatttcaacccttggatgagatgaagaaacttcttacattccacctatttataggagaa |
384 |
Q |
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| T |
19003617 |
actatcacttttggatttcaacccttggatgagatgaagaaacttcttacattccacctatttataggagaa |
19003546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 30 - 84
Target Start/End: Complemental strand, 19003900 - 19003846
Alignment:
| Q |
30 |
aaatgtatgcataatttccatcctctctgaatttaaagttggcactaatcggaag |
84 |
Q |
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| T |
19003900 |
aaatgcatgcataatttccatcctctctgaatttaaagttggcactaatcggaag |
19003846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 299 - 384
Target Start/End: Complemental strand, 29435439 - 29435353
Alignment:
| Q |
299 |
gaactctatttctcactatcacttttggatttcaacccttggatgagatgaagaaacttcttaca-ttccacctatttataggagaa |
384 |
Q |
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| T |
29435439 |
gaactctatttctcactatctcttttggatttcaattcttggattggatgatgaaacttctcacatttcctcctatttataggagaa |
29435353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 285 - 326
Target Start/End: Complemental strand, 31478006 - 31477965
Alignment:
| Q |
285 |
aaagaggactgctagaactctatttctcactatcacttttgg |
326 |
Q |
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| T |
31478006 |
aaagaggactgctagaactctctttctcactatcactattgg |
31477965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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