View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0928_high_78 (Length: 383)

Name: NF0928_high_78
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0928_high_78
NF0928_high_78
[»] chr7 (12 HSPs)
chr7 (4-372)||(6992247-6992622)
chr7 (4-173)||(7007362-7007533)
chr7 (4-173)||(7022720-7022891)
chr7 (4-173)||(7053233-7053404)
chr7 (236-285)||(7007535-7007584)
chr7 (236-285)||(7022893-7022942)
chr7 (236-285)||(7053406-7053455)
chr7 (338-372)||(7005855-7005889)
chr7 (338-372)||(7021213-7021247)
chr7 (338-372)||(7051726-7051760)
chr7 (340-372)||(7007738-7007770)
chr7 (340-372)||(7023096-7023128)


Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 4 - 372
Target Start/End: Original strand, 6992247 - 6992622
Alignment:
Q  4 tctgtaatggttcagatatcaacaccagtaacagaatgaatctcaaac------acttttcactagtataaatgatgagaacagggaacaaatggttgag 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||    
T  6992247 tctgtaatggttcagatatcaacaccagtaacagaatgaatctcaaactcaaacacttttcactagtataaatgatgagaacagggaacaaatggttgag 6992346  T
Q  98 ttgagaaatacaaatactgatgaccaattaacagtacaatttatggaaggtaaaaatactgaaagtaagatagagaagaagaaatcattccggagaatgc 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  6992347 ttgagaaatacaaatactgatgaccaattaacagtacaatttatggaaggtaaaaatactgaaagtaaaatagagaagaagaaatcattccggagaatgc 6992446  T
Q  198 caa-gggaggaaaaagtcacttccatcaaattcttcacacctatgattgccaaccctcactccttcaatatcagtcacaagggaatatttctattagcat 296  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  6992447 caaagggaggaaaaagtcacttccatcaaattcttcacacctatgattgccaaccctcactacttcagtatcagtcacaagggaatatttctattagcat 6992546  T
Q  297 cttactctttctcttgcttctcacctcccaaaagtgtggatcagttgccatttgtctcatttcagaaactgattct 372  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6992547 cttactctctctcttgcttctcacctcccaaaagtgtggatcagttgccatttgtctcatttcagaaactgattct 6992622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 4 - 173
Target Start/End: Original strand, 7007362 - 7007533
Alignment:
Q  4 tctgtaatggttcagatatca-acaccagtaacagaatgaatctcaaacacttttcactagtataaatgatgagaacagggaacaaatggttgagttgag 102  Q
    ||||||| ||||||||||||  |||||| ||||| ||||| ||||||||||| |||||||||||||||||| |||||| |||| |||||| ||| |||||    
T  7007362 tctgtaacggttcagatatcttacaccaataacaaaatgagtctcaaacactattcactagtataaatgattagaacaaggaaaaaatggctgaattgag 7007461  T
Q  103 aaatacaaatactgatgaccaat-taacagtacaatttatggaaggtaaaaatactgaaagtaagatagaga 173  Q
    ||||||||||||||||||||||| ||| |||| ||||||||||||| |||||||||||||||||||||||||    
T  7007462 aaatacaaatactgatgaccaatgtaatagtagaatttatggaagggaaaaatactgaaagtaagatagaga 7007533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 4 - 173
Target Start/End: Original strand, 7022720 - 7022891
Alignment:
Q  4 tctgtaatggttcagatatca-acaccagtaacagaatgaatctcaaacacttttcactagtataaatgatgagaacagggaacaaatggttgagttgag 102  Q
    ||||||| ||||||||||||  |||||| ||||| ||||| ||||||||||| |||||||||||||||||| |||||| |||| |||||| ||| |||||    
T  7022720 tctgtaacggttcagatatcttacaccaataacaaaatgagtctcaaacactattcactagtataaatgattagaacaaggaaaaaatggctgaattgag 7022819  T
Q  103 aaatacaaatactgatgaccaat-taacagtacaatttatggaaggtaaaaatactgaaagtaagatagaga 173  Q
    ||||||||||||||||||||||| ||| |||| ||||||||||||| |||||||||||||||||||||||||    
T  7022820 aaatacaaatactgatgaccaatgtaatagtagaatttatggaagggaaaaatactgaaagtaagatagaga 7022891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 4 - 173
Target Start/End: Original strand, 7053233 - 7053404
Alignment:
Q  4 tctgtaatggttcagatatca-acaccagtaacagaatgaatctcaaacacttttcactagtataaatgatgagaacagggaacaaatggttgagttgag 102  Q
    ||||||| ||||||||||||  |||||| ||||| ||||| ||||||||||| |||||||||||||||||| |||||| |||| |||||| ||| |||||    
T  7053233 tctgtaacggttcagatatcttacaccaataacaaaatgagtctcaaacactattcactagtataaatgattagaacaaggaaaaaatggctgaattgag 7053332  T
Q  103 aaatacaaatactgatgaccaat-taacagtacaatttatggaaggtaaaaatactgaaagtaagatagaga 173  Q
    ||||||||||||||||||||||| ||| |||| ||||||||||||| |||||||||||||||||||||||||    
T  7053333 aaatacaaatactgatgaccaatgtaatagtagaatttatggaagggaaaaatactgaaagtaagatagaga 7053404  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 285
Target Start/End: Original strand, 7007535 - 7007584
Alignment:
Q  236 cctatgattgccaaccctcactccttcaatatcagtcacaagggaatatt 285  Q
    |||||||||||||| ||||||||||| ||||||||||| |||||||||||    
T  7007535 cctatgattgccaatcctcactcctttaatatcagtcaaaagggaatatt 7007584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 285
Target Start/End: Original strand, 7022893 - 7022942
Alignment:
Q  236 cctatgattgccaaccctcactccttcaatatcagtcacaagggaatatt 285  Q
    |||||||||||||| ||||||||||| ||||||||||| |||||||||||    
T  7022893 cctatgattgccaatcctcactcctttaatatcagtcaaaagggaatatt 7022942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 285
Target Start/End: Original strand, 7053406 - 7053455
Alignment:
Q  236 cctatgattgccaaccctcactccttcaatatcagtcacaagggaatatt 285  Q
    |||||||||||||| ||||||||||| ||||||||||| |||||||||||    
T  7053406 cctatgattgccaatcctcactcctttaatatcagtcaaaagggaatatt 7053455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 338 - 372
Target Start/End: Original strand, 7005855 - 7005889
Alignment:
Q  338 cagttgccatttgtctcatttcagaaactgattct 372  Q
    |||||||||||||||||||||||||||||||||||    
T  7005855 cagttgccatttgtctcatttcagaaactgattct 7005889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 338 - 372
Target Start/End: Original strand, 7021213 - 7021247
Alignment:
Q  338 cagttgccatttgtctcatttcagaaactgattct 372  Q
    |||||||||||||||||||||||||||||||||||    
T  7021213 cagttgccatttgtctcatttcagaaactgattct 7021247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 338 - 372
Target Start/End: Original strand, 7051726 - 7051760
Alignment:
Q  338 cagttgccatttgtctcatttcagaaactgattct 372  Q
    |||||||||||||||||||||||||||||||||||    
T  7051726 cagttgccatttgtctcatttcagaaactgattct 7051760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 340 - 372
Target Start/End: Original strand, 7007738 - 7007770
Alignment:
Q  340 gttgccatttgtctcatttcagaaactgattct 372  Q
    |||||||||||||||||| ||||||||||||||    
T  7007738 gttgccatttgtctcattgcagaaactgattct 7007770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 340 - 372
Target Start/End: Original strand, 7023096 - 7023128
Alignment:
Q  340 gttgccatttgtctcatttcagaaactgattct 372  Q
    |||||||||||||||||| ||||||||||||||    
T  7023096 gttgccatttgtctcattgcagaaactgattct 7023128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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