View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0928_high_96 (Length: 363)

Name: NF0928_high_96
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0928_high_96
NF0928_high_96
[»] chr8 (8 HSPs)
chr8 (22-255)||(2982255-2982488)
chr8 (127-255)||(2709263-2709388)
chr8 (127-249)||(9849080-9849199)
chr8 (124-249)||(3004351-3004473)
chr8 (50-97)||(2707923-2707970)
chr8 (210-249)||(2991339-2991378)
chr8 (52-94)||(2709179-2709221)
chr8 (49-97)||(9848999-9849047)
[»] chr6 (2 HSPs)
chr6 (123-249)||(18357748-18357871)
chr6 (52-94)||(18357900-18357942)
[»] chr1 (1 HSPs)
chr1 (123-255)||(10753648-10753777)


Alignment Details
Target: chr8 (Bit Score: 176; Significance: 9e-95; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 22 - 255
Target Start/End: Complemental strand, 2982488 - 2982255
Alignment:
Q  22 aaatctctacaaccgcacacctcaatgtgttgaagtgatgagatgttgcatatccaatatggcaatgcatttaggttacaatgnnnnnnngtgannnnnn 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||       ||||          
T  2982488 aaatctctacaaccgcacacctcaatgtgttgaagtgatgagatgttgcatatccaatatggcaatgcatttaggtcacaatgaaaaaaagtgatttttt 2982389  T
Q  122 ngagggaaggaagacagttgaggtcatctttaaaccaccacatttcaattacttgaaactttcgacttgaaagaaagtaaaattcaagattctcaagaga 221  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  2982388 tgagggaaggaagacagttgaggtcatctttaaaccaccacatttcaattacttgaaatttttgacttgaaagaaagtaaaattcaagattctcaagaga 2982289  T
Q  222 agtaagatttttaaaccaatcctttggggctttt 255  Q
    | ||||||||||||||||||||||||||||||||    
T  2982288 aataagatttttaaaccaatcctttggggctttt 2982255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 127 - 255
Target Start/End: Original strand, 2709263 - 2709388
Alignment:
Q  127 gaaggaagacagttgaggtcatctttaaaccaccacatttcaattacttgaaactttcgacttgaaagaaagtaaaattcaagattctcaagagaagtaa 226  Q
    ||||||||||| ||||||| |||||||||||||   |||||||||||||| || |||  |||   |||||||||||| | ||||||||||||||||||||    
T  2709263 gaaggaagacaattgaggttatctttaaaccac---atttcaattacttgtaagtttttactcataagaaagtaaaagtgaagattctcaagagaagtaa 2709359  T
Q  227 gatttttaaaccaatcctttggggctttt 255  Q
    ||||||||||||||||||| || ||||||    
T  2709360 gatttttaaaccaatccttcggagctttt 2709388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 127 - 249
Target Start/End: Original strand, 9849080 - 9849199
Alignment:
Q  127 gaaggaagacagttgaggtcatctttaaaccaccacatttcaattacttgaaactttcgacttgaaagaaagtaaaattcaagattctcaagagaagtaa 226  Q
    |||||||| || |||||| |||||||||||||   |||||||||||||||||||| |  |||||||| ||||||||| ||||||||||||||||| || |    
T  9849080 gaaggaaggcaattgaggccatctttaaacca---catttcaattacttgaaactgttcacttgaaacaaagtaaaaatcaagattctcaagagatgtga 9849176  T
Q  227 gatttttaaaccaatcctttggg 249  Q
    ||||||  |||||||| ||||||    
T  9849177 gattttgcaaccaatcttttggg 9849199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 124 - 249
Target Start/End: Complemental strand, 3004473 - 3004351
Alignment:
Q  124 agggaaggaagacagttgaggtcatctttaaaccaccacatttcaattacttgaaactttcgacttgaaagaaagtaaaattcaagattctcaagagaag 223  Q
    |||||||||||| || ||| ||||||||||||||||  |   |||||||||| ||| | | |||||||||||||| ||||||||||||||||||||||||    
T  3004473 agggaaggaagatagatgaagtcatctttaaaccacgtc---tcaattacttcaaattgttgacttgaaagaaagaaaaattcaagattctcaagagaag 3004377  T
Q  224 taagatttttaaaccaatcctttggg 249  Q
    | |||||||  ||||||| |||||||    
T  3004376 tgagattttgcaaccaattctttggg 3004351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 97
Target Start/End: Original strand, 2707923 - 2707970
Alignment:
Q  50 gttgaagtgatgagatgttgcatatccaatatggcaatgcatttaggt 97  Q
    |||||||||||||||||||||||||||||| ||| ||||| |||||||    
T  2707923 gttgaagtgatgagatgttgcatatccaatctggtaatgcctttaggt 2707970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 210 - 249
Target Start/End: Complemental strand, 2991378 - 2991339
Alignment:
Q  210 attctcaagagaagtaagatttttaaaccaatcctttggg 249  Q
    |||||| ||||||||||||||||| |||||||||||||||    
T  2991378 attctcgagagaagtaagatttttcaaccaatcctttggg 2991339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 94
Target Start/End: Original strand, 2709179 - 2709221
Alignment:
Q  52 tgaagtgatgagatgttgcatatccaatatggcaatgcattta 94  Q
    |||||||||||||||||||||||||||| ||| ||||| ||||    
T  2709179 tgaagtgatgagatgttgcatatccaatctggtaatgccttta 2709221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 9848999 - 9849047
Alignment:
Q  49 tgttgaagtgatgagatgttgcatatccaatatggcaatgcatttaggt 97  Q
    |||||||||||||| | |||||||| ||||||||||| || ||||||||    
T  9848999 tgttgaagtgatgataggttgcatacccaatatggcagtgtatttaggt 9849047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 123 - 249
Target Start/End: Complemental strand, 18357871 - 18357748
Alignment:
Q  123 gagggaaggaagacagttgaggtcatctttaaaccaccacatttcaattacttgaaactttcgacttgaaagaaagtaaaattcaagattctcaagagaa 222  Q
    |||||||||||||||  ||||||||||||||||||||   ||||||||||||| ||| | | ||||||| | | |||  || ||||||||||| ||||||    
T  18357871 gagggaaggaagacaaatgaggtcatctttaaaccac---atttcaattacttcaaattgttgacttgacaaagagtctaagtcaagattctcgagagaa 18357775  T
Q  223 gtaagatttttaaaccaatcctttggg 249  Q
    ||||||||||| |||||||||||||||    
T  18357774 gtaagatttttcaaccaatcctttggg 18357748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 94
Target Start/End: Complemental strand, 18357942 - 18357900
Alignment:
Q  52 tgaagtgatgagatgttgcatatccaatatggcaatgcattta 94  Q
    |||||||||||||||||||||||||||| ||| ||||| ||||    
T  18357942 tgaagtgatgagatgttgcatatccaatctggtaatgccttta 18357900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 123 - 255
Target Start/End: Original strand, 10753648 - 10753777
Alignment:
Q  123 gagggaaggaagacagttgaggtcatctttaaaccaccacatttcaattacttgaaactttcgacttgaaagaaagtaaaattcaagattctcaagagaa 222  Q
    ||||||| ||||||| ||| |||||| |||||||||   ||||||||||||||||||   | |||||||||||  || ||| ||||||| ||| ||||||    
T  10753648 gagggaacgaagacaattggggtcatttttaaacca---catttcaattacttgaaatccttgacttgaaagattgtcaaagtcaagatcctcgagagaa 10753744  T
Q  223 gtaagatttttaaaccaatcctttggggctttt 255  Q
    ||||||||||||||||||||||| || ||||||    
T  10753745 gtaagatttttaaaccaatccttcggagctttt 10753777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 813 times since January 2019
Visitors: 6719