View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0928_high_97 (Length: 360)

Name: NF0928_high_97
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0928_high_97
NF0928_high_97
[»] chr7 (5 HSPs)
chr7 (77-298)||(24230686-24230913)
chr7 (290-347)||(24232643-24232700)
chr7 (290-346)||(24122148-24122204)
chr7 (290-344)||(24132579-24132633)
chr7 (294-347)||(24238084-24238137)
[»] chr2 (3 HSPs)
chr2 (204-298)||(42769517-42769611)
chr2 (290-346)||(10988834-10988890)
chr2 (290-336)||(28160509-28160555)
[»] chr4 (1 HSPs)
chr4 (7-47)||(9452967-9453007)
[»] chr1 (1 HSPs)
chr1 (7-47)||(46424154-46424194)


Alignment Details
Target: chr7 (Bit Score: 136; Significance: 7e-71; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 77 - 298
Target Start/End: Original strand, 24230686 - 24230913
Alignment:
Q  77 tattggagtattatgtatcgagtcacaaactaaacttttttgcaatattgatgtgtggctccatcaaaaagtgaattcggttcaacaataaacctatcaa 176  Q
    ||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||| ||||||    
T  24230686 tattggactattatgtaccgagtaacaaactaaacttttttgcaatattgatgtgtggctctatcaaaaagagaattcggttcagcaataaacatatcaa 24230785  T
Q  177 caaagatttaagt--ataaaaaat----agtgatacctgtattttagggggcgggggcaattcttccaccaatgtagctcttggaacctgcaaaacttga 270  Q
    ||||||| ||| |  |||||||||    |||||||||||||||||||||||| ||||||||||||||||||| || ||| ||||||| ||||||||||||    
T  24230786 caaagatgtaaataaataaaaaatagcgagtgatacctgtattttagggggcaggggcaattcttccaccaaagtggctgttggaacttgcaaaacttga 24230885  T
Q  271 gtaccacttgaacaatccggaagctgaa 298  Q
    |||||||| |||||||| ||||||||||    
T  24230886 gtaccactcgaacaatctggaagctgaa 24230913  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 290 - 347
Target Start/End: Original strand, 24232643 - 24232700
Alignment:
Q  290 gaagctgaagagagcatcaacgaaatccttccccgcttcagcatacacgactttgttc 347  Q
    ||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||    
T  24232643 gaagctgaagagagcatcaacgaaatccttcccagcctcagcatacacaactttgttc 24232700  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 290 - 346
Target Start/End: Original strand, 24122148 - 24122204
Alignment:
Q  290 gaagctgaagagagcatcaacgaaatccttccccgcttcagcatacacgactttgtt 346  Q
    ||||||||| ||||||||||| ||||||||||| |||||||||||||| ||||||||    
T  24122148 gaagctgaaaagagcatcaacaaaatccttccctgcttcagcatacacaactttgtt 24122204  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 290 - 344
Target Start/End: Original strand, 24132579 - 24132633
Alignment:
Q  290 gaagctgaagagagcatcaacgaaatccttccccgcttcagcatacacgactttg 344  Q
    ||||||||| ||||||||||| ||||||||||| |||||||||||||| ||||||    
T  24132579 gaagctgaaaagagcatcaacaaaatccttccctgcttcagcatacacaactttg 24132633  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 347
Target Start/End: Complemental strand, 24238137 - 24238084
Alignment:
Q  294 ctgaagagagcatcaacgaaatccttccccgcttcagcatacacgactttgttc 347  Q
    |||||||||||||| || |||||||| || || ||||||||||| |||||||||    
T  24238137 ctgaagagagcatcgacaaaatccttgcctgcctcagcatacacaactttgttc 24238084  T

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Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 204 - 298
Target Start/End: Complemental strand, 42769611 - 42769517
Alignment:
Q  204 tacctgtattttagggggcgggggcaattcttccaccaatgtagctcttggaacctgcaaaacttgagtaccacttgaacaatccggaagctgaa 298  Q
    ||||||||| ||||| ||| | |||||| |||||||| | | ||||||||||||||||| |||||||||||| | ||||| ||||||||||||||    
T  42769611 tacctgtatgttaggaggcagaggcaatccttccaccgaaggagctcttggaacctgcacaacttgagtaccgcctgaaccatccggaagctgaa 42769517  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 346
Target Start/End: Complemental strand, 10988890 - 10988834
Alignment:
Q  290 gaagctgaagagagcatcaacgaaatccttccccgcttcagcatacacgactttgtt 346  Q
    ||||||||||||| ||||||||||||||||| | || ||||||||||  ||||||||    
T  10988890 gaagctgaagagaacatcaacgaaatccttcactgcctcagcatacagaactttgtt 10988834  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 336
Target Start/End: Complemental strand, 28160555 - 28160509
Alignment:
Q  290 gaagctgaagagagcatcaacgaaatccttccccgcttcagcataca 336  Q
    ||||||||| |||||| |||| ||||||||||| |||||||||||||    
T  28160555 gaagctgaaaagagcaccaacaaaatccttccctgcttcagcataca 28160509  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 9452967 - 9453007
Alignment:
Q  7 tatatttaatgaattcaccgcttcatcttaaaagagcaaca 47  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  9452967 tatatttaatgaatttaccgcttcatcttaaaagagcaaca 9453007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 46424154 - 46424194
Alignment:
Q  7 tatatttaatgaattcaccgcttcatcttaaaagagcaaca 47  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  46424154 tatatttaatgaattcatcgcttcatcttaaaagagcaaca 46424194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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