View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_low_107 (Length: 366)
Name: NF0928_low_107
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_low_107 |
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Alignment Details
Target: chr6 (Bit Score: 121; Significance: 6e-62; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 81 - 213
Target Start/End: Complemental strand, 13740659 - 13740527
Alignment:
| Q |
81 |
gcacagaacaatacaaaacactccactccacaatacccccataactaaaacatgcccctagaagttcacctcagacaaacaacaagtagcaaaatcacaa |
180 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
13740659 |
gcacagaacaatacaaaacactccactccacaatacccccataactaaaacatgcccctagaagttcacctcagacaaacaacatgtagcaaaattacaa |
13740560 |
T |
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| Q |
181 |
acaaaaataaatatgactccaagtaaagcctgc |
213 |
Q |
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||||||| ||||||||||||||||||||||||| |
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| T |
13740559 |
acaaaaacaaatatgactccaagtaaagcctgc |
13740527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 81 - 213
Target Start/End: Complemental strand, 13746159 - 13746027
Alignment:
| Q |
81 |
gcacagaacaatacaaaacactccactccacaatacccccataactaaaacatgcccctagaagttcacctcagacaaacaacaagtagcaaaatcacaa |
180 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
13746159 |
gcacagaacaatacaaaacactccactccacaatacccccataactaaaacatgcccctagaagttcacctcagacaaacaacatgtagcaaaattacaa |
13746060 |
T |
|
| Q |
181 |
acaaaaataaatatgactccaagtaaagcctgc |
213 |
Q |
| |
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||||||| ||||||||||||||||||||||||| |
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| T |
13746059 |
acaaaaacaaatatgactccaagtaaagcctgc |
13746027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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