View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0928_low_117 (Length: 358)

Name: NF0928_low_117
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0928_low_117
NF0928_low_117
[»] chr4 (4 HSPs)
chr4 (110-353)||(2828513-2828771)
chr4 (41-131)||(2827308-2827398)
chr4 (8-45)||(493640-493677)
chr4 (8-45)||(18191301-18191338)
[»] scaffold0096 (2 HSPs)
scaffold0096 (175-248)||(33113-33186)
scaffold0096 (107-169)||(33204-33266)
[»] chr1 (1 HSPs)
chr1 (256-353)||(47044698-47044795)
[»] scaffold0002 (1 HSPs)
scaffold0002 (8-45)||(183839-183876)
[»] chr5 (1 HSPs)
chr5 (8-45)||(34658639-34658676)
[»] chr8 (1 HSPs)
chr8 (202-236)||(45446687-45446721)


Alignment Details
Target: chr4 (Bit Score: 133; Significance: 4e-69; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 110 - 353
Target Start/End: Original strand, 2828513 - 2828771
Alignment:
Q  110 cctttgtgcgggtcacatgttaactttttcaattacaccaagaacaaagtatgtgaatgtgtaa-------------caataatttaattctttctaann 196  Q
    ||||| ||||||||| ||||||||||||||||| |||| |||||||||||| ||||||||||||             |||||||||||||||||||||      
T  2828513 cctttatgcgggtcatatgttaactttttcaatcacacgaagaacaaagtacgtgaatgtgtaatttaagaatctaacaataatttaattctttctaatt 2828612  T
Q  197 nnnnngagtcattttcaacaaaatttggtacatatgttttccatgttaataannnnnnn-acacggtaaattatttttaaggttgtttt-tcacataata 294  Q
         |||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||| ||||||||||    
T  2828613 tttttgagtcattttcaacaaaatttggtacatatgttttccatgttaataaatttttttacacggtaaattatttttaaggttgttttttcacataata 2828712  T
Q  295 tttctcaacatgtaataatttgtacggtcgttttcttttctctacatgtagtaatttgt 353  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2828713 tttctcaacatgtaataatttgtacggttgttttcttttctctacatgtagtaatttgt 2828771  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 41 - 131
Target Start/End: Original strand, 2827308 - 2827398
Alignment:
Q  41 ccaccatcatatctatattcccaacatgcctgtttgtgttctccatgcacattcacaacnnnnnnncttcctttgtgcgggtcacatgtta 131  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||       |||||||||||||||||||| ||||    
T  2827308 ccaccatcagatctatattcccaacatgcctgtttgtgttctccatgctcattcgcaactttttttcttcctttgtgcgggtcacaagtta 2827398  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 493640 - 493677
Alignment:
Q  8 gcagagacagccaggaggtttgcctagaagcagccacc 45  Q
    ||||||||||||||||||||||||||||||||||||||    
T  493640 gcagagacagccaggaggtttgcctagaagcagccacc 493677  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 18191301 - 18191338
Alignment:
Q  8 gcagagacagccaggaggtttgcctagaagcagccacc 45  Q
    ||||||||||||||||||||||||||||||||||||||    
T  18191301 gcagagacagccaggaggtttgcctagaagcagccacc 18191338  T

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Target: scaffold0096 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 175 - 248
Target Start/End: Complemental strand, 33186 - 33113
Alignment:
Q  175 aataatttaattctttctaannnnnnngagtcattttcaacaaaatttggtacatatgttttccatgttaataa 248  Q
    ||||||||||||||||||||       |||||||||| |||||||||||||| ||||||||||||| |||||||    
T  33186 aataatttaattctttctaatttttttgagtcattttaaacaaaatttggtatatatgttttccattttaataa 33113  T

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Target: scaffold0096; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 169
Target Start/End: Complemental strand, 33266 - 33204
Alignment:
Q  107 cttcctttgtgcgggtcacatgttaactttttcaattacaccaagaacaaagtatgtgaatgt 169  Q
    |||| |||||| |||| ||||||||| ||||||||| |||  || ||||||||||||||||||    
T  33266 cttcgtttgtgtgggtgacatgttaattttttcaatcacatgaaaaacaaagtatgtgaatgt 33204  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 256 - 353
Target Start/End: Original strand, 47044698 - 47044795
Alignment:
Q  256 acacggtaaattatttttaaggttgtttt-tcacataatatttctcaacatgtaataatttgtacggtcgttttcttttctctacatgtagtaatttgt 353  Q
    |||||||||| ||||||||||||  |||| ||||||||||||  || |||||||||||||| ||| || | ||| |||| |||||||||||||||||||    
T  47044698 acacggtaaactatttttaaggtcattttttcacataatattattctacatgtaataatttatacagttggttt-ttttttctacatgtagtaatttgt 47044795  T

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Target: scaffold0002 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 183876 - 183839
Alignment:
Q  8 gcagagacagccaggaggtttgcctagaagcagccacc 45  Q
    ||||||||||||||||||||||||||||||||||||||    
T  183876 gcagagacagccaggaggtttgcctagaagcagccacc 183839  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 34658639 - 34658676
Alignment:
Q  8 gcagagacagccaggaggtttgcctagaagcagccacc 45  Q
    ||||||||||||||||||||||||||||||||||||||    
T  34658639 gcagagacagccaggaggtttgcctagaagcagccacc 34658676  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 236
Target Start/End: Complemental strand, 45446721 - 45446687
Alignment:
Q  202 gagtcattttcaacaaaatttggtacatatgtttt 236  Q
    |||||||||||||||||||||||||||||| ||||    
T  45446721 gagtcattttcaacaaaatttggtacatatatttt 45446687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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