View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_low_119 (Length: 356)
Name: NF0928_low_119
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_low_119 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 152 - 356
Target Start/End: Original strand, 32266026 - 32266231
Alignment:
| Q |
152 |
attcacagctttactgttatgagattttgcagcaggaaaagaatcactttctgaactgttttcttcatcactctcaacatctgttgttgaatcataagaa |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32266026 |
attcacagctttactgttatgagattttgcagcaggaaaagaatcactttctgaactgttttcttcatcactctcaacatctgttgttgaatcataagaa |
32266125 |
T |
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| Q |
252 |
atatcattgtccttttcataatcaaaaaactcatatttcaaacatttgctaccattctcatagatttcttcatttttgttgctaaaag-aaaatccttca |
350 |
Q |
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| T |
32266126 |
atatcattgtccttttcataatcaaaaaactcatatttcaaacttttgctaccattctcatagatttctttatttttgttgctaaaagaaaaatccttca |
32266225 |
T |
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| Q |
351 |
gagttt |
356 |
Q |
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|||||| |
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| T |
32266226 |
gagttt |
32266231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 32265878 - 32265956
Alignment:
| Q |
4 |
ctccaacaatatgtgatcttttatgtcctcctaatgcttgtcctgacctgaaaattttataacaaattggacattcata |
82 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
32265878 |
ctccaacaaaatgtgatcttttatgtcctcctaatgcttgtcctgacctgaaaattttgtagcaaattggacattcata |
32265956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 19300405 - 19300482
Alignment:
| Q |
4 |
ctccaacaatatgtgatcttttatgtcctcctaatgcttgtcctgacctgaaaattttataacaaattggacattcat |
81 |
Q |
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|||||| || ||| |||||||| || || ||||| |||||||||||| ||||||| || | |||||||||||||||| |
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| T |
19300405 |
ctccaataaaatgggatcttttgtgaccccctaaagcttgtcctgacttgaaaatcttgttgcaaattggacattcat |
19300482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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