View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0928_low_122 (Length: 351)

Name: NF0928_low_122
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0928_low_122
NF0928_low_122
[»] chr8 (1 HSPs)
chr8 (85-329)||(22941968-22942219)
[»] chr6 (1 HSPs)
chr6 (87-153)||(3787528-3787596)


Alignment Details
Target: chr8 (Bit Score: 151; Significance: 8e-80; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 85 - 329
Target Start/End: Original strand, 22941968 - 22942219
Alignment:
85 aagttttctaatgtaaaattgcttttttggttgattaatatgtgcccttagaacacaagttaacatgacnnnnnnn--------gacaaaaattgtctac 176  Q
    ||||||| ||||||||||||| | ||||||||| |||| ||||| ||||||||||||||||||||||||               ||||||||||||||||    
22941968 aagttttttaatgtaaaattgttcttttggttg-ttaacatgtgtccttagaacacaagttaacatgacaaaaaaaaaaaaaaagacaaaaattgtctac 22942066  T
177 ttttaatcgctgatttgcctaagccagtgattttaggtgcttaaaattccatgtaaagggatctaagatttcatttaatttaattattttatatatgatc 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
22942067 ttttaatcgctgatttgcctaagccagtgattttaggtgcttaaaattccatgtaaagggatctaagatttcatttcatttaattattttatatatgatc 22942166  T
277 aaatatgttaactcattaccgaagaaaagaataatgtagcttaaaagccacac 329  Q
    ||||||||||||||||||  ||||||||| ||||| |||||||||||| ||||    
22942167 aaatatgttaactcattattgaagaaaaggataatatagcttaaaagcaacac 22942219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 87 - 153
Target Start/End: Original strand, 3787528 - 3787596
Alignment:
87 gttttctaatgtaaaattgcttttttgg--ttgattaatatgtgcccttagaacacaagttaacatgac 153  Q
    ||||||||||||||||||||| |||| |  || ||||| |||||||||||| ||| |||||||||||||    
3787528 gttttctaatgtaaaattgctctttttgaattcattaacatgtgcccttaggacataagttaacatgac 3787596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University