View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_low_123 (Length: 351)
Name: NF0928_low_123
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_low_123 |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 9 - 322
Target Start/End: Original strand, 4145039 - 4145352
Alignment:
| Q |
9 |
aagaatatgaagcaaaattcctatagtagtaagagttgtaaagtgatttcaaagttgttaatccctgaagacttggtgtttgatatccttagttttctcc |
108 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4145039 |
aagaatatgaagcaaaattcctatagtggtaagagttgtaaagtgatttcaaagttgttaatccctgaagacttggtgtttgatatccttagttttctcc |
4145138 |
T |
|
| Q |
109 |
ctgttaaatgtctgcttaactctgcaaggtatgtttacaaaccttgggctactactattcgcagctccctgtttgccgaagcgtgcctacatcgtgcaca |
208 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4145139 |
ctgttaaatgtctgcttaactctgcaaggtatgtttgcaaatcttgggctactactattcgcagctccctgtttgccgaagcgtgcctacatcgtgcaca |
4145238 |
T |
|
| Q |
209 |
ttcaaaacctggtctatatgttgaaaattgcaagcatcaaaataattcttatttcttggatattaaagatgatgtgaatagtctatttgaatttgaaagg |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4145239 |
ttcaaaacctggtctatatgttgaaaattgcaagcatcaaaataattattatttcttggatattaaagatgatgtgaatagtctatttgaatttgaaagg |
4145338 |
T |
|
| Q |
309 |
tctaatatgggaac |
322 |
Q |
| |
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||||| |||||||| |
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| T |
4145339 |
tctaacatgggaac |
4145352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 31 - 286
Target Start/End: Complemental strand, 2327232 - 2326977
Alignment:
| Q |
31 |
atagtagtaagagttgtaaagtgatttcaaagttgttaatccctgaagacttggtgtttgatatccttagttttctccctgttaaatgtctgcttaactc |
130 |
Q |
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| T |
2327232 |
atagtactaagagttgtaaaatgatttcaaagttgcttctacttgaagacttgaggtttcatatctttacttttgttcctcttaattgcctgcttaactc |
2327133 |
T |
|
| Q |
131 |
tgcaaggtatgtttacaaaccttgggctactactattcgcagctccctgtttgccgaagcgtgcctacatcgtgcacattcaaaacctggtctatatgtt |
230 |
Q |
| |
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|||||||||||| |||||| |||||| |||||||| ||||||||| ||||| ||||| | | || | ||||||||| |||| |||||| |||||| |
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| T |
2327132 |
tgcaaggtatgtaaacaaactgtgggctgctactattggcagctcccattttgctgaagcatacgaacgccatgcacattctaaacttggtctttatgtt |
2327033 |
T |
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| Q |
231 |
gaaaattgcaagcatcaaaataattcttatttcttggatattaaagatgatgtgaa |
286 |
Q |
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|||||||||| | | | | ||||||||||||||||| |||||||| ||||||| |
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| T |
2327032 |
gaaaattgcatggaaccggacaattcttatttcttggaatttaaagattatgtgaa |
2326977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 35 - 176
Target Start/End: Original strand, 39571552 - 39571693
Alignment:
| Q |
35 |
tagtaagagttgtaaagtgatttcaaagttgttaatccctgaagacttggtgtttgatatccttagttttctccctgttaaatgtctgcttaactctgca |
134 |
Q |
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||||||||||||||||||||||||||||||| | |||||||||| || ||||||||||| ||||||| | ||| |||| | || |||||||| || |
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| T |
39571552 |
tagtaagagttgtaaagtgatttcaaagttgctgctccctgaagatttattgtttgatatctttagtttggttcctcttaatagcctaattaactctaca |
39571651 |
T |
|
| Q |
135 |
aggtatgtttacaaaccttgggctactactattcgcagctcc |
176 |
Q |
| |
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| T |
39571652 |
agatatgtttgcaaatcttgggcggctactattcgcagctcc |
39571693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 254 - 299
Target Start/End: Original strand, 39571771 - 39571816
Alignment:
| Q |
254 |
ttcttatttcttggatattaaagatgatgtgaatagtctatttgaa |
299 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||| | ||||||| |
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|
| T |
39571771 |
ttcttatttcttggatattaaagatgatatgaataggcaatttgaa |
39571816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 39 - 287
Target Start/End: Original strand, 9846270 - 9846518
Alignment:
| Q |
39 |
aagagttgtaaagtgatttcaaagttgttaatccctgaagacttggtgtttgatatccttagttttctccctgttaaatgtctgcttaactctgcaaggt |
138 |
Q |
| |
|
||||||||| |||||||||||| | |||| | |||||| |||||||||||||||||||||| || | | | |||| || ||| |||| |||||||||| |
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| T |
9846270 |
aagagttgtgaagtgatttcaacgctgttgcttcctgaacacttggtgtttgatatccttaggttggttcatcttaactgcctgattaattctgcaaggt |
9846369 |
T |
|
| Q |
139 |
atgtttacaaaccttgggctactactattcgcagctccctgtttgccgaagcgtgcctacatcgtgcacattcaaaacctggtctatatgttgaaaattg |
238 |
Q |
| |
|
|||||| ||| |||||||| |||||||| ||||||||| |||| ||| |||| | ||||||| ||| ||||||||||| |||||||||||| | |
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| T |
9846370 |
atgtttgtaaagcttgggctgctactattgccagctccctttttgttgaaatgtgcgaaagccgtgcacgttctaaacctggtctttatgttgaaaatcg |
9846469 |
T |
|
| Q |
239 |
ca-agcatcaaaataattcttatttcttggatattaaagatgatgtgaat |
287 |
Q |
| |
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|| | || || | || ||||||||||||||| ||||||||||||||||| |
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|
| T |
9846470 |
cacaaca-cagagtagttcttatttcttggaatttaaagatgatgtgaat |
9846518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 38 - 287
Target Start/End: Original strand, 9841190 - 9841439
Alignment:
| Q |
38 |
taagagttgtaaagtgatttcaaagttgttaatccctgaagacttggtgtttgatatccttagttttctccctgttaaatgtctgcttaactctgcaagg |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||| | | |||||||||| ||||| || |||||| ||| | ||| ||| || || ||||||||||||| |
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| T |
9841190 |
taagagttgtaaagtgatttcaaagttgttgcttcttgaagacttgttgtttcatgtccttactttggttcctcttacctgcttgtttaactctgcaaga |
9841289 |
T |
|
| Q |
138 |
tatgtttacaaaccttgggctactactattcgcagctccctgtttgccgaagcgtgcctacatcgtgcacattcaaaacctggtctatatgttgaaaatt |
237 |
Q |
| |
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||||||| ||||||||||||| |||||||| ||||||| ||||| ||||| | | || ||| ||| ||| || ||||||||||||||| |||||| |
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| T |
9841290 |
tatgtttgcaaaccttgggctgctactattgcaagctccccttttgctgaagcatacgaacgccgtccacgttctaagcctggtctatatgttcaaaatt |
9841389 |
T |
|
| Q |
238 |
gca-agcatcaaaataattcttatttcttggatattaaagatgatgtgaat |
287 |
Q |
| |
|
||| || | || || ||||||||||||||| ||||||||||||||||| |
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|
| T |
9841390 |
gcaccacaac-aagtagttcttatttcttggaatttaaagatgatgtgaat |
9841439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 38 - 176
Target Start/End: Original strand, 9902143 - 9902281
Alignment:
| Q |
38 |
taagagttgtaaagtgatttcaaagttgttaatccctgaagacttggtgtttgatatccttagttttctccctgttaaatgtctgcttaactctgcaagg |
137 |
Q |
| |
|
|||||||||| |||| ||||||||| |||| | |||||||||||| ||||| ||||||||| ||| | ||| || | |||||| | |||||||||||| |
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|
| T |
9902143 |
taagagttgtgaagtaatttcaaaggtgttgcttcctgaagacttgatgttttatatccttactttggttcctcttgattgtctgatcaactctgcaagg |
9902242 |
T |
|
| Q |
138 |
tatgtttacaaaccttgggctactactattcgcagctcc |
176 |
Q |
| |
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||||||| ||||||||||||| ||| |||| ||||||| |
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|
| T |
9902243 |
tatgtttgcaaaccttgggctgctattattgccagctcc |
9902281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 192
Target Start/End: Original strand, 7256125 - 7256194
Alignment:
| Q |
123 |
cttaactctgcaaggtatgtttacaaaccttgggctactactattcgcagctccctgtttgccgaagcgt |
192 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||| |||| ||| ||||||||| ||||| ||||||| |
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|
| T |
7256125 |
cttaactctgcgaggtatgtttgcaaaccttgggctgctacaattggcagctcccattttgctgaagcgt |
7256194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 49388426 - 49388351
Alignment:
| Q |
8 |
gaagaatatgaagcaaaattcctatagtagtaagagttgtaaagtgatttcaaagttgttaatccctgaagacttg |
83 |
Q |
| |
|
|||||||||||| ||||| || |||||| | |||||| |||||||||||||||| || | |||||||||||||| |
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|
| T |
49388426 |
gaagaatatgaaccaaaactcaaatagtactgagagttataaagtgatttcaaagctgcttctccctgaagacttg |
49388351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 177
Target Start/End: Original strand, 46445273 - 46445330
Alignment:
| Q |
120 |
ctgcttaactctgcaaggtatgtttacaaaccttgggctactactattcgcagctccc |
177 |
Q |
| |
|
||||||||||||||||||| ||||| || | ||||||||||| ||||| |||||||| |
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|
| T |
46445273 |
ctgcttaactctgcaaggtttgtttgcatatcttgggctactgttattcacagctccc |
46445330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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