View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_low_124 (Length: 350)
Name: NF0928_low_124
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_low_124 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 96 - 343
Target Start/End: Complemental strand, 28649306 - 28649061
Alignment:
| Q |
96 |
gacactgcctatgagccatactcaacaggcataaactatatgttatttttgtttgcttgaaatatcaaataagaaaaagtgtggaaaatcctaaacaaat |
195 |
Q |
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| T |
28649306 |
gacactgcctatgagccatactcaacaagcataaactatatgttatttttgtttgcttgaaagaccaaataagaaaaagtgtggaaaatcctagacaaat |
28649207 |
T |
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| Q |
196 |
ttggtggtatactcttacttttaacattaagcatgcattagcccttctaatcaatgataacattatattctttggttgttaatacccttatttccattaa |
295 |
Q |
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| T |
28649206 |
ttggtggtatactcttacttttaacattaagcaagcattaaccattctaatcaatgataaca--atattctttggttgttaatatccttatttccattaa |
28649109 |
T |
|
| Q |
296 |
ttttttcggttccttatagctagagccaccatctacttagaattatct |
343 |
Q |
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||||||||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
28649108 |
ttttttcggttgcttatagctagagccaccacctacttagaattatct |
28649061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 96 - 307
Target Start/End: Complemental strand, 28640004 - 28639794
Alignment:
| Q |
96 |
gacactgcctatgagccatactcaacaggcataaactatatgttatttttgttt-gcttgaaatatcaaataagaaaaagtgtggaaaatcctaaacaaa |
194 |
Q |
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||||||||||||| |||||||||| || |||| || ||||||||||||| ||| |||||||| | ||| |||||||||||||| ||||||||| ||||| |
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| T |
28640004 |
gacactgcctatgttccatactcaatagtcatagaccatatgttattttttttttgcttgaaagaccaattaagaaaaagtgtgtaaaatcctagacaaa |
28639905 |
T |
|
| Q |
195 |
tttggtggtatactcttacttttaacattaagcatgcattagcccttctaatcaatgataacattatattctttggttgttaataccc--ttatttccat |
292 |
Q |
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| T |
28639904 |
attggtggtgtactcttactttaaacattaa----gcattaccccttctaatcaatgatggcattatatgctttggttgttaatatccatatatttcaat |
28639809 |
T |
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| Q |
293 |
taattttttcggttc |
307 |
Q |
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||||||||||||||| |
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| T |
28639808 |
taattttttcggttc |
28639794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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