View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_low_13 (Length: 734)
Name: NF0928_low_13
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_low_13 |
 | |
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| [»] scaffold0932 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 542; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 102 - 723
Target Start/End: Original strand, 17148531 - 17149147
Alignment:
| Q |
102 |
catctgccacctggtttccttctctgagcacatgcacacaagaacagataattttattacattacgaaacttaagacaattataccatctggctttcata |
201 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
17148531 |
catctgccacctggttgccttctctgagcacatgcacacaagaacagataatgttattaca-----aaacttaagacaattataccatctggctttcata |
17148625 |
T |
|
| Q |
202 |
tgccaaggaacgcccatgttcttgttaaaagcgttgaccactgatatggaatcagtttcaaggatgaaagcgtgtatctgcatttccttagccttctcaa |
301 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||| |
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| T |
17148626 |
tgccaaggtacgcccatgttcttgttaaaagcgttgaccactgatatggaatcagtttcaaggatgagagcatgtagctgcatttccttagccttctcaa |
17148725 |
T |
|
| Q |
302 |
ttgccatcatgcaagcagaaaattcagcctctagagcagaagcatatccaatgttgctagatattgccccaataaaagaggcagagtttctaatcacaat |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17148726 |
ttgccatcatgcaagcagaaaattcagcctctagagcataagcatatccaatgttgctagatattgccccaataaaagaggcagagtttctaatcacaat |
17148825 |
T |
|
| Q |
402 |
cccaacagcaccacagggctgcgctcccatagaagagccatcacaattgaatttaatcagatcattgacaggagggcaccaatgaaccaattgcctaact |
501 |
Q |
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|
||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
17148826 |
cccaacagcaccacagggctgcgctcccatagaagaggcgtcacaattgaatttaatcagatcattgacaggagggcaccaatgaaccaattgcctaatt |
17148925 |
T |
|
| Q |
502 |
gttattctcttagtctgcagagggatggaaaaaagcctagagatattgtagtctttcatgtcagagttacctttagctaaaaccaaatgatagctaattt |
601 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17148926 |
tttattctcttagtctgcaaagggatggaaaaaagcctagagatgttgtagtctttcatgtcagagttacctttagctaaaaccaaatgatagctaattt |
17149025 |
T |
|
| Q |
602 |
taacctccgccaaaatacagttgaacagggaagccatgtgccgaattttgttatgaaaacatctctgattccgctccatccaaatgatccatatagtgtg |
701 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
17149026 |
taacctccgccaaaatacagttgaacagggaagccatgtgccgaattttgttatgaaaacatctctgattccgctccatccagatgatccatatagtgtg |
17149125 |
T |
|
| Q |
702 |
aatgatggcagagttcagaata |
723 |
Q |
| |
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||||||||||||||||| |||| |
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| T |
17149126 |
aatgatggcagagttcaaaata |
17149147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 29 - 108
Target Start/End: Original strand, 17142318 - 17142397
Alignment:
| Q |
29 |
agtatgaacggaggtggagtgggccaccactgagatgagaacatagctaagctttgaccattctttgccaaagcatctgc |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17142318 |
agtatgaacggaggtggagtgggccaccactgagatgagaacatagctaagctttgaccattctttgccaaagcatctgc |
17142397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 29 - 635
Target Start/End: Complemental strand, 28790151 - 28789550
Alignment:
| Q |
29 |
agtatgaacggaggtggagtgggccaccactgagatgagaacatagctaagctttgaccattctttgccaaagcatctgccacctggtttccttctctga |
128 |
Q |
| |
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|||| |||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
28790151 |
agtaggaacggaggtggggtaggccaccactgagaggagaacatagctaagctttgaccattctttgccaaagcatcggccacctggttgccttctctga |
28790052 |
T |
|
| Q |
129 |
gcacatgcacacaagaacagataattttattacattacgaaacttaagacaattataccatctggctttcatatgccaaggaacgcccatgttcttgtta |
228 |
Q |
| |
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|||||||||| ||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28790051 |
gcacatgcacgcaagaacagatgatgttattaca-----aaacttaagacaattataccatctggctttcatatgccaaggaacgcccatgttcttgtta |
28789957 |
T |
|
| Q |
229 |
aaagcgttgaccactgatatggaatcagtttcaaggatgaaagcgtgtatctgcatttccttagccttctcaattgccatcatgcaagcagaaaattcag |
328 |
Q |
| |
|
|||| |||||||||| ||||||||||||||| ||||||| ||| |||| |||||| ||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
28789956 |
aaagtgttgaccactcttatggaatcagtttctaggatgatagcatgtagctgcatctccttggccttctcaattgccatcatgcaagcagaaaattcag |
28789857 |
T |
|
| Q |
329 |
cctctagagcagaagcatatccaatgttgctagatattgccccaataaaagaggcagagtttctaatcacaatcccaacagcaccacagggctgcgctcc |
428 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
28789856 |
cctcaagagcagaagcatatccaatgttgctagatatggccccaataaatgaagcagagtttctaatcactatcccaacagcaccacagggctgcgctcc |
28789757 |
T |
|
| Q |
429 |
catagaagagccatcacaattgaatttaatcagatcattgacaggagggcaccaatgaaccaattgcctaactgttattctcttagtctgcagagggatg |
528 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||| |
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|
| T |
28789756 |
tatagaagagccatcacagttgaatttaatcagttcattggcaggagggcaccaatgaaccagttgcctaactgttattctcttactctagagagggatg |
28789657 |
T |
|
| Q |
529 |
gaaaaaagcctagagatattgtagtctttcatgtcagagttacctttagctaaaaccaaatgatagctaattttaacctccgccaaaatacagttgaaca |
628 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
28789656 |
gaaaaaagcctagagatgttgtagtctttcatgtcagagttaccttaagccaaaaccaaatgatagctaattttaacctccgccagaatatagttgaaca |
28789557 |
T |
|
| Q |
629 |
gggaagc |
635 |
Q |
| |
|
||||||| |
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|
| T |
28789556 |
gggaagc |
28789550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0932 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold0932
Description:
Target: scaffold0932; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 50 - 629
Target Start/End: Original strand, 1548 - 2122
Alignment:
| Q |
50 |
ggccaccactgagatgagaacatagctaagctttgaccattctttgccaaagcatctgccacctggtttccttctctgagcacatgcacacaagaacaga |
149 |
Q |
| |
|
||||||||||| || || |||||||| |||| ||||||||| || |||||||||||||| ||| |||| ||||||||||||||||||||||| || | |
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|
| T |
1548 |
ggccaccactgggaggaaaacatagccaagccttgaccatttttagccaaagcatctgctacccggttgccttctctgagcacatgcacacaggagaaag |
1647 |
T |
|
| Q |
150 |
taattttattacattacgaaacttaagacaattataccatctggctttcatatgccaaggaacgcccatgttcttgttaaaagcgttgaccactgatatg |
249 |
Q |
| |
|
|||| || || || ||||| |||||||| ||||||| |||| |||| |||||||||| ||||| || ||||| || || || ||| | | |
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|
| T |
1648 |
taatgttgttgca-----gaacttgagacaattgtaccatcaggctctcatttgccaaggaatgcccacattattgttgaacgcagaaactactttaagg |
1742 |
T |
|
| Q |
250 |
gaatcagtttcaaggatgaaagcgtgtatctgcatttccttagccttctcaattgccatcatgcaagcagaaaattcagcctctagagcagaagcatatc |
349 |
Q |
| |
|
|| |||||||| | ||| | ||| |||| |||| ||||| |||||||||||||| ||||||||| |||||||||||| || |||| | ||||||| |
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|
| T |
1743 |
gagtcagtttccaagataatagcatgtaagtgcaactccttggccttctcaattgctctcatgcaagtagaaaattcagcttcaagagttgtggcatatc |
1842 |
T |
|
| Q |
350 |
caatgttgctagatattgccccaataaaagaggcagagtttctaatcacaatcccaacagcaccacagggctgcgctcccatagaagagccatcacaatt |
449 |
Q |
| |
|
||||||||||| |||| ||||||| ||| || | | | || || ||||| || | ||| ||||| |||||| ||| ||||| || |||||||| || |
|
|
| T |
1843 |
caatgttgctacatatggccccaagaaaggaagtgggagtcctgataacaattcctatagcgccacaaggctgcattcctatagaggatccatcacagtt |
1942 |
T |
|
| Q |
450 |
gaatttaatcagatcattgacaggagggcaccaatgaaccaattgcctaactgttattctcttagtctgcagagggatggaaaaaagcctagagatattg |
549 |
Q |
| |
|
|||||| ||| |||| | |||||| ||||||||||| || ||||||||||| ||||| || || | || || ||||||||| ||||| ||| |
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|
| T |
1943 |
gaattttgtcatttcatggggaggaggacaccaatgaacatcttttctaactgttatcctcttggtttggaatggtatattaaaaagccttgagattttg |
2042 |
T |
|
| Q |
550 |
tagtctttcatgtcagagttacctttagctaaaaccaaatgatagctaattttaacctccgccaaaatacagttgaacag |
629 |
Q |
| |
|
|| |||||||| |||||||| | |||||| || |||||| ||| |||| |||||||| | |||||||||||| ||||| |
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|
| T |
2043 |
taatctttcatatcagagttgcatttagccaagaccaaagtataactaagcttaacctcagacaaaatacagttaaacag |
2122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 98 - 149
Target Start/End: Complemental strand, 9715595 - 9715544
Alignment:
| Q |
98 |
aaagcatctgccacctggtttccttctctgagcacatgcacacaagaacaga |
149 |
Q |
| |
|
||||||||||| || ||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
9715595 |
aaagcatctgcaacttggttaccttctctgagcacatgaacacaagaacaga |
9715544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 148
Target Start/End: Complemental strand, 22216079 - 22216017
Alignment:
| Q |
86 |
ccattctttgccaaagcatctgccacctggtttccttctctgagcacatgcacacaagaacag |
148 |
Q |
| |
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||||||||||| || |||||||| ||||| || ||||| ||||||||||| |||||||||||| |
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|
| T |
22216079 |
ccattctttgctaaggcatctgcaacctgattcccttccctgagcacatggacacaagaacag |
22216017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 148
Target Start/End: Complemental strand, 25179449 - 25179387
Alignment:
| Q |
86 |
ccattctttgccaaagcatctgccacctggtttccttctctgagcacatgcacacaagaacag |
148 |
Q |
| |
|
||||||||||| ||||||| ||| ||||| || ||||| ||||||||||| |||||||||||| |
|
|
| T |
25179449 |
ccattctttgctaaagcatttgcaacctgattcccttccctgagcacatggacacaagaacag |
25179387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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