View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_low_133 (Length: 341)
Name: NF0928_low_133
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_low_133 |
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Alignment Details
Target: chr8 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 117 - 313
Target Start/End: Complemental strand, 9711797 - 9711602
Alignment:
| Q |
117 |
tagacattgatcattacttaagagtatgacactagttaaaggcctcttattctcctatttccatgccattattgactaactatttctccaaaaaagagag |
216 |
Q |
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| T |
9711797 |
tagacattgatcattacttaagagtatgacactagttaaaggcctcttattctcctatttccatgccattattgactaactacttctccaaaaaagagag |
9711698 |
T |
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| Q |
217 |
gacaga-aaaacacatgaacctatgatttttgcaataagaaataataaccatgcatgcatacatatgcaatgaaacagaaagcgtgcacgacatattt |
313 |
Q |
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| T |
9711697 |
gacagaaaaaacacatgaacctatgatttttgcaataagaaataataaccatgcatgcatac--atgcaatgaaatagaaagtgtgcacgacatattt |
9711602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 25706221 - 25706071
Alignment:
| Q |
1 |
cccactgaatcacctgcaaacacagtgcgtccattgcgacttctttttaggaggtcacttgaattattgaatctgagagtaacacaaggaatgaatcaag |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| || | |||||||||||| | ||||||||||||||||| ||||| ||||| ||||| |
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| T |
25706221 |
cccactgaatcacctgcaaacacaatgcgtccattgcgactcctctctaggaggtcactgg---cattgaatctgagagtaaaacaagaaatgagtcaag |
25706125 |
T |
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| Q |
101 |
acaagttaattattattagacattgatcattacttaagagtatgacactagttaaa |
156 |
Q |
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| T |
25706124 |
agaagtt-gttatta-aatatattgatcattacttaagagtatgacactagttaaa |
25706071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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