View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_low_135 (Length: 340)
Name: NF0928_low_135
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_low_135 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 32 - 254
Target Start/End: Complemental strand, 47911373 - 47911151
Alignment:
| Q |
32 |
agggcttagacgagtctgttataaaagctattccgtctttcatctacaccaccgcaaagtctgaacaagaagaagaatctcgtgctgagtgtgcagtttg |
131 |
Q |
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| T |
47911373 |
agggcttagacgagtctgttataaaagctattccgtctttcatctacaccaccgcaaagtctgaacaagaagaagaatttcgtgctgagtgtgcagtttg |
47911274 |
T |
|
| Q |
132 |
cttggaggaattccaagataataatcacatccgtaccctccctatttgctctcacactttccatctcaattgcattgacgtttggctccgttcaaacgct |
231 |
Q |
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| T |
47911273 |
cttggaggagttccaagataataatcacatccgtaccctccctatttgctctcacactttccatctcaattgcattgacgtttggctccgttcaaacgct |
47911174 |
T |
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| Q |
232 |
agctgtcctgtatgtcgctcctg |
254 |
Q |
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||||||||||||||||||||||| |
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| T |
47911173 |
agctgtcctgtatgtcgctcctg |
47911151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 34 - 251
Target Start/End: Complemental strand, 47899526 - 47899309
Alignment:
| Q |
34 |
ggcttagacgagtctgttataaaagctattccgtctttcatctacaccaccgcaaagtctgaacaagaagaagaatctcgtgctgagtgtgcagtttgct |
133 |
Q |
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| T |
47899526 |
ggcttagatgagtctgttatatatgctattccgtccttcatctataccaccacaaagtctgaacaagaagaagaatctcgtggtgagtgtgttgtttgct |
47899427 |
T |
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| Q |
134 |
tggaggaattccaagataataatcacatccgtaccctccctatttgctctcacactttccatctcaattgcattgacgtttggctccgttcaaacgctag |
233 |
Q |
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| T |
47899426 |
tggaggagtacgaagataatgatcacattcgcatccttccgttttgctcccacactttccatctcaattgtatcgacgtttggcttcgttcaaaccctag |
47899327 |
T |
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| Q |
234 |
ctgtcctgtatgtcgctc |
251 |
Q |
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| T |
47899326 |
ttgtcctttgtgtcgctc |
47899309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 139 - 252
Target Start/End: Complemental strand, 47906099 - 47905986
Alignment:
| Q |
139 |
gaattccaagataataatcacatccgtaccctccctatttgctctcacactttccatctcaattgcattgacgtttggctccgttcaaacgctagctgtc |
238 |
Q |
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|||||| |||||||| |||| | |||||||||||| ||||||| |||| ||| |||| | |||||||||| |||||||| ||||||||| ||| ||||| |
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| T |
47906099 |
gaattcaaagataatgatcatgttcgtaccctccctctttgctcccacatttttcatcacgattgcattgatgtttggcttcgttcaaacactaactgtc |
47906000 |
T |
|
| Q |
239 |
ctgtatgtcgctcc |
252 |
Q |
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|| ||||||||||| |
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| T |
47905999 |
ctctatgtcgctcc |
47905986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 139 - 252
Target Start/End: Complemental strand, 47908871 - 47908758
Alignment:
| Q |
139 |
gaattccaagataataatcacatccgtaccctccctatttgctctcacactttccatctcaattgcattgacgtttggctccgttcaaacgctagctgtc |
238 |
Q |
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|||||| |||||||| |||| | |||||||||||| ||||||| |||| ||| |||| | |||||||||| |||||||| ||||||||| ||| ||||| |
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| T |
47908871 |
gaattcaaagataatgatcatgttcgtaccctccctctttgctcccacatttttcatcacgattgcattgatgtttggcttcgttcaaacactaactgtc |
47908772 |
T |
|
| Q |
239 |
ctgtatgtcgctcc |
252 |
Q |
| |
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|| ||||||||||| |
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| T |
47908771 |
ctctatgtcgctcc |
47908758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 114; Significance: 9e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 34 - 251
Target Start/End: Original strand, 31209511 - 31209728
Alignment:
| Q |
34 |
ggcttagacgagtctgttataaaagctattccgtctttcatctacaccaccgcaaagtctgaacaagaagaagaatctcgtgctgagtgtgcagtttgct |
133 |
Q |
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|||||||| |||||||||||| | ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
31209511 |
ggcttagatgagtctgttatatatgctattccgtccttcatctataccaccgcaaagtctgaacaagaagaagaatctcgtggtgagtgtgttgtttgct |
31209610 |
T |
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| Q |
134 |
tggaggaattccaagataataatcacatccgtaccctccctatttgctctcacactttccatctcaattgcattgacgtttggctccgttcaaacgctag |
233 |
Q |
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| T |
31209611 |
tggaggagtacgaagataatgatcccattcgcatccttccgttttgctcccacactttccatctcaattgtattgacgtttggcttcgttctaaccctag |
31209710 |
T |
|
| Q |
234 |
ctgtcctgtatgtcgctc |
251 |
Q |
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||||||| | |||||||| |
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| T |
31209711 |
ctgtcctttgtgtcgctc |
31209728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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