View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_low_14 (Length: 722)
Name: NF0928_low_14
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 496; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 30 - 541
Target Start/End: Complemental strand, 41226007 - 41225496
Alignment:
| Q |
30 |
actcacttgttttggagtccttctcggtgccgtttctgtccagttcagtattaggcattgctgaaattgccataacatcaggcgaagcgccgttgtaagc |
129 |
Q |
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| T |
41226007 |
actcacttgttttggagtccttctcggtgccgtttctgtccagttcagtattaggcattgctgaaattgccataacatcaggcaaagcgccgttgtaagc |
41225908 |
T |
|
| Q |
130 |
aagcgacaactgaacaaaacctgctggtgaatggaatagatcagtcgaagaaagagagaactctttctctagttttccatctttcatcaatacatcggac |
229 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41225907 |
aagtgacaactgaacaaaacctgctggtgaatggaatagatcagtcgaagaaagagagaactctttctctagttttccatctttcatcaatacatcggac |
41225808 |
T |
|
| Q |
230 |
aaaggtaccaaagcaaaaccaagtagttggtcttcaagataattcttcaccctgctaagcatccagatctcacatttgagagaagaatcaacggtcctaa |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
41225807 |
aaaggtaccaaagcaaaaccaagtagttggtcttcaagataattcttcaccctgctaagcatccagatctcacatttgagagaagaatcgacggtcctaa |
41225708 |
T |
|
| Q |
330 |
cacttagacgaaggttatcgttaaaaacgggatttcttcctcctccattgataatcttggtattgacagaattttcaggatcactagtcaaagaaatctt |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41225707 |
cacttagacgaaggttatcgttaaaaacgggatttcttcctcctccattgataatcttggtattgacagaattttcaggatcactagtcaaagaaatctt |
41225608 |
T |
|
| Q |
430 |
agcataaacatcttgcttgtggtatatgcagatgttatgaatgtccctagcttgatgtatgtaaacatcaactactccaataaattcctctggattagac |
529 |
Q |
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| T |
41225607 |
agcataaacatcttgcttgtggtatatgcagatcttatgaatgtccctagcttgatgtatgtaaacatcaactactccaataaattcctctggattagac |
41225508 |
T |
|
| Q |
530 |
actgcaacagct |
541 |
Q |
| |
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|||||||||||| |
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| T |
41225507 |
actgcaacagct |
41225496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 540 - 657
Target Start/End: Complemental strand, 41225459 - 41225342
Alignment:
| Q |
540 |
ctagggctttgtgttaaatcatcagacttatacttctcaccatgtcccaagatagaactcttgaatggtgacacaacagattgtggagattccatgatat |
639 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41225459 |
ctagagctttgtgttaaatcatcagacttatacttctcaccatgtcccaagatagaactcttgaatggtgacacaacagattgtggagattccatgatat |
41225360 |
T |
|
| Q |
640 |
cagagtcaataggaacct |
657 |
Q |
| |
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| T |
41225359 |
cagagtcaataggaacct |
41225342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 132; Significance: 3e-68; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 95 - 498
Target Start/End: Complemental strand, 22227795 - 22227392
Alignment:
| Q |
95 |
attgccataacatcaggcgaagcgccgttgtaagcaagcgacaactgaacaaaacctgctggtgaatggaatagatcagtcgaagaaagagagaactctt |
194 |
Q |
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||||||||||||||||| | ||| ||| ||||||||| ||||| ||||||||||||| || ||||| || |||||||| ||||||||||| ||||||| |
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| T |
22227795 |
attgccataacatcaggtgtagcaccggtgtaagcaatggacaattgaacaaaacctgaaggagaatgaaacagatcagttgaagaaagagaaaactctt |
22227696 |
T |
|
| Q |
195 |
tctctagttttccatctttcatcaatacatcggacaaaggtaccaaagcaaaaccaagtagttggtcttcaagataattcttcaccctgctaagcatcca |
294 |
Q |
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|||||||||| |||| | | | ||| || ||||| || ||||||||||||||||| | || ||||||||||||||||||||||||||||||||||| |
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| T |
22227695 |
tctctagtttaccattctggactagtacttctgacaacggcaccaaagcaaaaccaagcaactgatcttcaagataattcttcaccctgctaagcatcca |
22227596 |
T |
|
| Q |
295 |
gatctcacatttgagagaagaatcaacggtcctaacacttagacgaaggttatcgttaaaaacgggatttcttcctcctccattgataatcttggtattg |
394 |
Q |
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| ||||||||||||||| |||||||| || |||| | |||||||| || |||||||| || || || ||||| |||||||| || |||| ||| | |
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| T |
22227595 |
tagctcacatttgagagacgaatcaacatcccaaacattgagacgaagattgtcgttaaacacagggttccttccacctccattaatggtcttagtagag |
22227496 |
T |
|
| Q |
395 |
acagaattttcaggatcactagtcaaagaaatcttagcataaacatcttgcttgtggtatatgcagatgttatgaatgtccctagcttgatgtatgtaaa |
494 |
Q |
| |
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|| || || |||| ||| |||| ||||||||||||||||||||||||||||||||||||| || || |||||||||||||| |||||||| |||| |
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| T |
22227495 |
acgctgttctccggattacttgtcaggtaaatcttagcataaacatcttgcttgtggtatatgcaaatattctgaatgtccctagcctgatgtatataaa |
22227396 |
T |
|
| Q |
495 |
catc |
498 |
Q |
| |
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|||| |
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|
| T |
22227395 |
catc |
22227392 |
T |
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