View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0928_low_144 (Length: 333)

Name: NF0928_low_144
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0928_low_144
NF0928_low_144
[»] chr5 (5 HSPs)
chr5 (14-152)||(2937999-2938137)
chr5 (193-306)||(2938178-2938291)
chr5 (60-100)||(8121452-8121492)
chr5 (35-99)||(11911937-11912000)
chr5 (28-100)||(15368136-15368207)
[»] chr7 (1 HSPs)
chr7 (10-73)||(45004905-45004967)
[»] chr3 (3 HSPs)
chr3 (31-101)||(40339077-40339146)
chr3 (31-106)||(3845236-3845310)
chr3 (31-83)||(52925735-52925786)
[»] chr8 (1 HSPs)
chr8 (34-101)||(4554226-4554292)
[»] chr2 (2 HSPs)
chr2 (31-106)||(37561594-37561668)
chr2 (31-83)||(1976989-1977040)
[»] chr6 (1 HSPs)
chr6 (31-101)||(578822-578891)
[»] chr4 (1 HSPs)
chr4 (25-101)||(2635055-2635130)


Alignment Details
Target: chr5 (Bit Score: 135; Significance: 3e-70; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 14 - 152
Target Start/End: Original strand, 2937999 - 2938137
Alignment:
Q  14 tactagagagtaatcatacatgtcaaaatcaatttttactcctctacaatcaattttggctcctccaaaataaaaaccaaacatacaccaagttatggtt 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2937999 tactagagagtaatcatacatgtcaaaatcaatttttactcctctagaatcaattttggctcctccaaaataaaaaccaaacatacaccaagttatggtt 2938098  T
Q  114 ttggatgattctatataaaagcaaatggatgcaagtgga 152  Q
    |||||||||||||||||||||||||||||||||||||||    
T  2938099 ttggatgattctatataaaagcaaatggatgcaagtgga 2938137  T

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Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 193 - 306
Target Start/End: Original strand, 2938178 - 2938291
Alignment:
Q  193 gtggcttctttgtaggatgttccttataagcctgaagagttttatgttcagacacgaaaatgtgagccagatgctggtgcaaatgttgtgaagatatgcg 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  2938178 gtggcttctttgtaggatgttccttataagcctgaagagttttatgttcagacgcgaaaatgtgagccagatgctggtgcaaatgttgtgaagatatgcg 2938277  T
Q  293 agaggtgagctgtg 306  Q
    ||||||||||||||    
T  2938278 agaggtgagctgtg 2938291  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 100
Target Start/End: Complemental strand, 8121492 - 8121452
Alignment:
Q  60 caatcaattttggctcctccaaaataaaaaccaaacataca 100  Q
    ||||||||||||| ||||||||||| | |||||||||||||    
T  8121492 caatcaattttgggtcctccaaaattagaaccaaacataca 8121452  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 99
Target Start/End: Original strand, 11911937 - 11912000
Alignment:
Q  35 gtcaaaatcaatttttactcctctacaatcaattttggctcctccaaaataaaaaccaaacatac 99  Q
    ||||||||||||||| ||  ||||| ||||||||||| | || ||||||| ||||||||||||||    
T  11911937 gtcaaaatcaatttt-acatctctagaatcaattttgaccccaccaaaattaaaaccaaacatac 11912000  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 100
Target Start/End: Complemental strand, 15368207 - 15368136
Alignment:
Q  28 catacatgtcaaaatcaatttttactcctctacaatcaattttggctcctccaaaataaaaaccaaacataca 100  Q
    |||||||||||||||||||| | ||   |||| |||||||||||||||||||||||    |||||||||||||    
T  15368207 catacatgtcaaaatcaattct-acatatctagaatcaattttggctcctccaaaagtggaaccaaacataca 15368136  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 45004967 - 45004905
Alignment:
Q  10 attatactagagagtaatcatacatgtcaaaatcaatttttactcctctacaatcaattttggc 73  Q
    ||||||||||||||||| || ||||||||||||||| || ||| |||||| |||||||||||||    
T  45004967 attatactagagagtaaccaaacatgtcaaaatcaa-ttctacacctctagaatcaattttggc 45004905  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 101
Target Start/End: Complemental strand, 40339146 - 40339077
Alignment:
Q  31 acatgtcaaaatcaatttttactcctctacaatcaattttggctcctccaaaataaaaaccaaacatacac 101  Q
    ||||||||||||||||| | ||||||||| ||||||||||||| | |||||||   |||||||||||||||    
T  40339146 acatgtcaaaatcaattat-actcctctaaaatcaattttggcccttccaaaagttaaaccaaacatacac 40339077  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 106
Target Start/End: Original strand, 3845236 - 3845310
Alignment:
Q  31 acatgtcaaaatcaatttttactcctctacaatcaattttggctcctccaaaataaaaaccaaacatacaccaagt 106  Q
    ||||||||||||||||| | || |||||| |||||||||||| | ||||||||    |||||||||||||||||||    
T  3845236 acatgtcaaaatcaattct-acacctctagaatcaattttggttactccaaaagtggaaccaaacatacaccaagt 3845310  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 52925735 - 52925786
Alignment:
Q  31 acatgtcaaaatcaatttttactcctctacaatcaattttggctcctccaaaa 83  Q
    ||||||||||||||||| | || |||||| ||||||||||| |||||||||||    
T  52925735 acatgtcaaaatcaattat-acacctctagaatcaattttgactcctccaaaa 52925786  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 101
Target Start/End: Complemental strand, 4554292 - 4554226
Alignment:
Q  34 tgtcaaaatcaatttttactcctctacaatcaattttggctcctccaaaataaaaaccaaacatacac 101  Q
    |||||||||||||||| || |||||| ||||||||| ||||| ||||||||   ||||||||||||||    
T  4554292 tgtcaaaatcaatttt-acacctctagaatcaatttaggctcatccaaaatttgaaccaaacatacac 4554226  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 106
Target Start/End: Complemental strand, 37561668 - 37561594
Alignment:
Q  31 acatgtcaaaatcaatttttactcctctacaatcaattttggctcctccaaaataaaaaccaaacatacaccaagt 106  Q
    ||||||||||||||||||| || |||||| ||||||||  | ||| ||||||||  ||||||||||||||| ||||    
T  37561668 acatgtcaaaatcaatttt-acacctctagaatcaattccgcctcatccaaaattgaaaccaaacatacacaaagt 37561594  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 1976989 - 1977040
Alignment:
Q  31 acatgtcaaaatcaatttttactcctctacaatcaattttggctcctccaaaa 83  Q
    ||||||||||||||||||  |  |||||| |||||||||||||||||||||||    
T  1976989 acatgtcaaaatcaatttcaaa-cctctagaatcaattttggctcctccaaaa 1977040  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 101
Target Start/End: Complemental strand, 578891 - 578822
Alignment:
Q  31 acatgtcaaaatcaatttttactcctctacaatcaattttggctcctccaaaataaaaaccaaacatacac 101  Q
    ||||||||||||||||||| ||||||||| ||||||| ||| | | |||||| |  |||||||||||||||    
T  578891 acatgtcaaaatcaatttt-actcctctaaaatcaatcttgtcccttccaaacttgaaaccaaacatacac 578822  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 101
Target Start/End: Complemental strand, 2635130 - 2635055
Alignment:
Q  25 aatcatacatgtcaaaatcaatttttactcctctacaatcaattttggctcctccaaaataaaaaccaaacatacac 101  Q
    ||||| ||||||||||||||| |||||| | |||| ||||||||||||  |||| ||||   |||||||||||||||    
T  2635130 aatcaaacatgtcaaaatcaa-ttttacacttctagaatcaattttggtccctctaaaagtgaaaccaaacatacac 2635055  T

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