View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0928_low_146 (Length: 330)

Name: NF0928_low_146
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0928_low_146
NF0928_low_146
[»] chr8 (12 HSPs)
chr8 (16-325)||(2915856-2916165)
chr8 (16-325)||(2910898-2911207)
chr8 (16-273)||(2980308-2980565)
chr8 (16-153)||(3002401-3002538)
chr8 (16-280)||(3141936-3142200)
chr8 (88-292)||(9850858-9851062)
chr8 (16-153)||(2711183-2711320)
chr8 (16-162)||(3170158-3170304)
chr8 (17-72)||(3173813-3173868)
chr8 (241-326)||(3173559-3173644)
chr8 (245-325)||(13791585-13791665)
chr8 (244-326)||(2711013-2711095)
[»] chr6 (1 HSPs)
chr6 (129-320)||(8942296-8942487)
[»] chr1 (1 HSPs)
chr1 (16-162)||(10755548-10755694)
[»] scaffold0065 (2 HSPs)
scaffold0065 (23-162)||(45542-45681)
scaffold0065 (244-280)||(50932-50968)


Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 16 - 325
Target Start/End: Complemental strand, 2916165 - 2915856
Alignment:
Q  16 tgttggaattggcggtttaggtaagacagctcttgctcagttggtatataatgatgggggagtgcnnnnnnngtttgaaaagaagatatgggtatgtgtg 115  Q
    |||||| ||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||       ||||||||||||||||||||||||||||    
T  2916165 tgttggtattggcggtttaggtaagacagctcttgctcaactggtatataatgatggggaagtgcaaaaaaagtttgaaaagaagatatgggtatgtgtg 2916066  T
Q  116 tctgaagactttgatgtgaaaactattttgaagaacatattggagtcgttattaaatggaaaagttgatgaaaacttatcattagagaacttgcaaaata 215  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2916065 tctgaagactttgatgtcaaaactattttgaagaacatattggagtcgttattaaatggaaaagttgatgaaaacttatcattagagaacttgcaaaata 2915966  T
Q  216 acctccggcaaaatttatcgggaagaaaatactttttagtcctagatgacatttggaatgagagtcatcaaaaatggattgaattgagaacttacttgat 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2915965 acctccggcaaaatttatcgggaagaaaatactttttagtcctagatgacatttggaatgagagtcatcaaaaatggattgaattgagaacttacttgat 2915866  T
Q  316 ctgtgctgct 325  Q
     |||| ||||    
T  2915865 gtgtggtgct 2915856  T

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Target: chr8; HSP #2
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 16 - 325
Target Start/End: Complemental strand, 2911207 - 2910898
Alignment:
Q  16 tgttggaattggcggtttaggtaagacagctcttgctcagttggtatataatgatgggggagtgcnnnnnnngtttgaaaagaagatatgggtatgtgtg 115  Q
    |||||| ||||| |||||||| |||||||||||||||||||||||||| ||||||  || |||          || ||||||||||||||||| |||||     
T  2911207 tgttggtattggtggtttaggcaagacagctcttgctcagttggtatacaatgataaggaagtagaaaacattttcgaaaagaagatatgggtgtgtgtc 2911108  T
Q  116 tctgaagactttgatgtgaaaactattttgaagaacatattggagtcgttattaaatggaaaagttgatgaaaacttatcattagagaacttgcaaaata 215  Q
    ||| || |||||||||| ||||||||||||||||| ||||||||||| ||||||||||| |||||||| |||||||||||||| || |||||||||||||    
T  2911107 tctaaaaactttgatgtcaaaactattttgaagaaaatattggagtcattattaaatgggaaagttgacgaaaacttatcattggacaacttgcaaaata 2911008  T
Q  216 acctccggcaaaatttatcgggaagaaaatactttttagtcctagatgacatttggaatgagagtcatcaaaaatggattgaattgagaacttacttgat 315  Q
    ||||||| ||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| || ||||| |||||||||||    
T  2911007 acctccgtcaaaatttatcagaaagaaaatacttgttagtcctagatgacatttggaatgagagtcaccaaaaatggatcgagttgaggacttacttgat 2910908  T
Q  316 ctgtgctgct 325  Q
     |||| ||||    
T  2910907 gtgtggtgct 2910898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 16 - 273
Target Start/End: Original strand, 2980308 - 2980565
Alignment:
Q  16 tgttggaattggcggtttaggtaagacagctcttgctcagttggtatataatgatgggggagtgcnnnnnnngtttgaaaagaagatatgggtatgtgtg 115  Q
    |||||| ||||| ||||| || ||||| ||||||||||| |||||||| || ||||  | |||||       |||||||||||  || |||||||||||     
T  2980308 tgttggtattggtggtttgggaaagacggctcttgctcaattggtatacaacgatgaagaagtgcagaatttgtttgaaaagagaatgtgggtatgtgtc 2980407  T
Q  116 tctgaagactttgatgtgaaaactattttgaagaacatattggagtcgttattaaatggaaaagttgatgaaaacttatcattagagaacttgcaaaata 215  Q
    |||||  |||||||||| ||||||||| ||||||||||| ||||||| |||   ||| | ||| ||||||| |  ||||||||  | ||||||||||| |    
T  2980408 tctgataactttgatgtcaaaactattctgaagaacataatggagtcattaaccaataggaaatttgatgatacgttatcattgcaaaacttgcaaaaca 2980507  T
Q  216 acctccggcaaaatttatcgggaagaaaatactttttagtcctagatgacatttggaa 273  Q
      || ||  | |||||| | || | ||||||||| |||||||||||||||||||||||    
T  2980508 tgcttcgtgacaatttaactggtaaaaaatacttgttagtcctagatgacatttggaa 2980565  T

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Target: chr8; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 16 - 153
Target Start/End: Original strand, 3002401 - 3002538
Alignment:
Q  16 tgttggaattggcggtttaggtaagacagctcttgctcagttggtatataatgatgggggagtgcnnnnnnngtttgaaaagaagatatgggtatgtgtg 115  Q
    |||||| ||||| |||||||| |||||| |||||||||||||||||||||||||||| | |||||       ||||||||  |  || |||||||||||     
T  3002401 tgttgggattggtggtttaggaaagacaactcttgctcagttggtatataatgatggagaagtgcaaaatttgtttgaaataagtatgtgggtatgtgtc 3002500  T
Q  116 tctgaagactttgatgtgaaaactattttgaagaacat 153  Q
    |||||| |||||||||| ||||||||| ||||||||||    
T  3002501 tctgaaaactttgatgtaaaaactattgtgaagaacat 3002538  T

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Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 280
Target Start/End: Complemental strand, 3142200 - 3141936
Alignment:
Q  16 tgttggaattggcggtttaggtaagacagctcttgctcagttggtatataatgatgggggagtgcnnnnnnngtttgaaaagaagatatgggtatgtgtg 115  Q
    |||||| ||||| ||||| || |||||||||||| |||| |||||||| |||||||| | |||          |||||||||   || ||||| |||||     
T  3142200 tgttgggattggtggtttgggaaagacagctctttctcaattggtatacaatgatggtgaagtaacaaattattttgaaaagtgtatgtgggtttgtgtc 3142101  T
Q  116 tctgaagactttgatgtgaaaactattttgaagaacatattggagtcgttattaaatggaaaagttgatgaaaacttatcattagagaacttgcaaaata 215  Q
    |||||  |||||||||| ||||||||| |||||||||| |||||||| |||  ||| | |  | || |||| |  ||||||||||| ||||||||||| |    
T  3142100 tctgataactttgatgtcaaaactattgtgaagaacatgttggagtcattaacaaaggaaccaattaatgatacattatcattagaaaacttgcaaaaca 3142001  T
Q  216 acctccggcaaaatttatcgggaagaaaatactttttagtcctagatgacatttggaatgagagt 280  Q
      || ||  ||||| || | || | ||||||||| ||||||||||||||||||||||| ||||||    
T  3142000 tgcttcgagaaaatctaactggtaaaaaatacttgttagtcctagatgacatttggaacgagagt 3141936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 292
Target Start/End: Complemental strand, 9851062 - 9850858
Alignment:
Q  88 gtttgaaaagaagatatgggtatgtgtgtctgaagactttgatgtgaaaactattttgaagaacatattggagtcgttattaaatggaaaagttgatgaa 187  Q
    ||||||||||| ||| ||||||||||| |||||| ||||||| || ||||||||| |||||||||| |||||||| |||   ||    ||| |||||||     
T  9851062 gtttgaaaagaggatgtgggtatgtgtctctgaaaactttgaagtcaaaactattgtgaagaacatgttggagtcattaaccaagaacaaaattgatgat 9850963  T
Q  188 aacttatcattagagaacttgcaaaataacctccggcaaaatttatcgggaagaaaatactttttagtcctagatgacatttggaatgagagtcatcaaa 287  Q
       |||||||| || |||||||||| ||| || ||  |  ||||| | || |  | |||||| ||||| |||||||||||||||||||||||| || |||    
T  9850962 gcattatcattggacaacttgcaaactaagcttcgtgaccatttaactggtaagagatacttgttagttctagatgacatttggaatgagagttatgaaa 9850863  T
Q  288 aatgg 292  Q
    |||||    
T  9850862 aatgg 9850858  T

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Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 153
Target Start/End: Complemental strand, 2711320 - 2711183
Alignment:
Q  16 tgttggaattggcggtttaggtaagacagctcttgctcagttggtatataatgatgggggagtgcnnnnnnngtttgaaaagaagatatgggtatgtgtg 115  Q
    |||||| ||||| ||||| || ||||||||||||||||| |||||||| |||||||    |||||       |||||||||||  || |||||||||||     
T  2711320 tgttggtattggtggtttgggaaagacagctcttgctcaattggtatacaatgatgatcaagtgcaaaatttgtttgaaaagagtatgtgggtatgtgtc 2711221  T
Q  116 tctgaagactttgatgtgaaaactattttgaagaacat 153  Q
    || ||  |||||||||| ||||||||| ||||||||||    
T  2711220 tcggataactttgatgtcaaaactattctgaagaacat 2711183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 162
Target Start/End: Complemental strand, 3170304 - 3170158
Alignment:
Q  16 tgttggaattggcggtttaggtaagacagctcttgctcagttggtatataatgatgggggagtgcnnnnnnngtttgaaaagaagatatgggtatgtgtg 115  Q
    |||||| ||||| ||||| || ||||||||||||||||| |||||||| |||||||    |||          |||||||||| ||| |||||||||||     
T  3170304 tgttggtattggtggtttgggaaagacagctcttgctcaattggtatacaatgatgctcaagtaacaaagtcttttgaaaagaggatgtgggtatgtgtc 3170205  T
Q  116 tctgaagactttgatgtgaaaactattttgaagaacatattggagtc 162  Q
    |||||  |||||||||| ||||||||| ||||||| || ||||||||    
T  3170204 tctgataactttgatgtcaaaactattctgaagaaaatgttggagtc 3170158  T

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Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 3173868 - 3173813
Alignment:
Q  17 gttggaattggcggtttaggtaagacagctcttgctcagttggtatataatgatgg 72  Q
    ||||||||||| ||||| || ||||||||||||||||| |||||||| ||||||||    
T  3173868 gttggaattggtggtttggggaagacagctcttgctcaattggtatacaatgatgg 3173813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 241 - 326
Target Start/End: Complemental strand, 3173644 - 3173559
Alignment:
Q  241 aaaatactttttagtcctagatgacatttggaatgagagtcatcaaaaatggattgaattgagaacttacttgatctgtgctgctc 326  Q
    ||||||||| ||||||||||||||||||||||| |||||| |   |||||||| | ||||||| ||| | ||||| |||| |||||    
T  3173644 aaaatacttattagtcctagatgacatttggaacgagagttacgtaaaatggactcaattgaggactcatttgatgtgtggtgctc 3173559  T

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Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 325
Target Start/End: Original strand, 13791585 - 13791665
Alignment:
Q  245 tactttttagtcctagatgacatttggaatgagagtcatcaaaaatggattgaattgagaacttacttgatctgtgctgct 325  Q
    ||||| |||||| | ||||||||||| ||||  |||||| ||||||||| | ||||||||||||| ||||| |||| ||||    
T  13791585 tacttgttagtcttggatgacatttgcaatgctagtcatgaaaaatggactcaattgagaacttatttgatgtgtggtgct 13791665  T

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Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 326
Target Start/End: Complemental strand, 2711095 - 2711013
Alignment:
Q  244 atactttttagtcctagatgacatttggaatgagagtcatcaaaaatggattgaattgagaacttacttgatctgtgctgctc 326  Q
    |||||| |||||| | |||||||||||||| |||||| || |||| |||  ||||||||| ||||| ||||| |||| |||||    
T  2711095 atacttgttagtcttggatgacatttggaacgagagttatgaaaagtgggatgaattgaggacttatttgatgtgtggtgctc 2711013  T

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Target: chr6 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 129 - 320
Target Start/End: Complemental strand, 8942487 - 8942296
Alignment:
Q  129 atgtgaaaactattttgaagaacatattggagtcgttattaaatggaaaagttgatgaaaacttatcattagagaacttgcaaaataacctccggcaaaa 228  Q
    |||| |||||||||||||||||  ||||||||||||||||| ||||||||||||| |||||||||||||| || |||||||||| ||| ||| | |||||    
T  8942487 atgtcaaaactattttgaagaaggtattggagtcgttattatatggaaaagttgacgaaaacttatcattggacaacttgcaaagtaatctctgtcaaaa 8942388  T
Q  229 tttatcgggaagaaaatactttttagtcctagatgacatttggaatgagagtcatcaaaaatggattgaattgagaacttacttgatctgtg 320  Q
    |||||| | || ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||    
T  8942387 tttatcagaaataaaatacttattagtcctagatgacatttggaatgagagtcatcaaaaaaggattgaattgagtacttacttgatttgtg 8942296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 162
Target Start/End: Complemental strand, 10755694 - 10755548
Alignment:
Q  16 tgttggaattggcggtttaggtaagacagctcttgctcagttggtatataatgatgggggagtgcnnnnnnngtttgaaaagaagatatgggtatgtgtg 115  Q
    |||||| ||||| |||||||| ||||| ||||||||||| |||||||| || ||| | | |||||       |||||| ||||  || |||||||||||     
T  10755694 tgttggtattggtggtttagggaagacggctcttgctcaattggtatacaacgatagagaagtgcaagatttgtttgagaagagtatgtgggtatgtgtc 10755595  T
Q  116 tctgaagactttgatgtgaaaactattttgaagaacatattggagtc 162  Q
    |||||  ||||||| || ||||||||| |||||||||| ||||||||    
T  10755594 tctgataactttgacgtcaaaactattctgaagaacatgttggagtc 10755548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 23 - 162
Target Start/End: Original strand, 45542 - 45681
Alignment:
Q  23 attggcggtttaggtaagacagctcttgctcagttggtatataatgatgggggagtgcnnnnnnngtttgaaaagaagatatgggtatgtgtgtctgaag 122  Q
    ||||||||||| || ||||||||||||||||| |||||||| |||||||| | |||          |||||||||| ||| ||||||||||| ||| |      
T  45542 attggcggtttgggaaagacagctcttgctcaattggtatacaatgatggtgaagtaacaaagtcttttgaaaagaggatgtgggtatgtgtctctaata 45641  T
Q  123 actttgatgtgaaaactattttgaagaacatattggagtc 162  Q
    |||||||||| ||||||||| | |||||||| ||| ||||    
T  45642 actttgatgtcaaaactattctaaagaacatgttgaagtc 45681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 280
Target Start/End: Original strand, 50932 - 50968
Alignment:
Q  244 atactttttagtcctagatgacatttggaatgagagt 280  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  50932 atacttgttagtcctagatgacatttggaacgagagt 50968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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