View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_low_149 (Length: 325)
Name: NF0928_low_149
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_low_149 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 32266640 - 32266822
Alignment:
| Q |
18 |
ctctagacaacaacatcaaacatctagcaacctcttcttgttgttcctgttccatctcagaaacagatgaagaaccgccattaacagaagaagaagaagg |
117 |
Q |
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| T |
32266640 |
ctctagacaacaacatcaaacatctagcaacctcttcttgttgttcctgttccatctcagaaacagatgaagaaccaccattaacagaagaagaagaagg |
32266739 |
T |
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| Q |
118 |
ttgatgatttgaaagagtaatagacttgaacctaattcttctcttagatttccttagattcattgttgtagcagcaacacaaa |
200 |
Q |
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| T |
32266740 |
ttgctgatttgaaagagtaatagacttgaacctaattcttctcttagatttccttagattcattgttgtagcagcaacacaaa |
32266822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 227 - 296
Target Start/End: Original strand, 32266852 - 32266921
Alignment:
| Q |
227 |
gattgagtatcctcctccatcatagccttgttgatctttttctctttctcagaatgagaagccatgtgtc |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32266852 |
gattgagtatcctcctccatcatagccttgttgatctttttctctttctcagaatgagaagccatgtgtc |
32266921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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