View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0928_low_151 (Length: 325)

Name: NF0928_low_151
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0928_low_151
NF0928_low_151
[»] chr8 (3 HSPs)
chr8 (85-313)||(40723162-40723384)
chr8 (85-118)||(33837234-33837267)
chr8 (82-115)||(36805162-36805195)
[»] chr1 (3 HSPs)
chr1 (82-115)||(25586555-25586588)
chr1 (82-115)||(36037582-36037615)
chr1 (89-117)||(47966669-47966697)
[»] chr4 (3 HSPs)
chr4 (82-118)||(46282411-46282447)
chr4 (85-117)||(40090836-40090868)
chr4 (82-118)||(54921700-54921736)


Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 85 - 313
Target Start/End: Complemental strand, 40723384 - 40723162
Alignment:
Q  85 tcatcaaatgattgtacaaatatcattactcattatttagtctaacatataataaaaacatgtcaatgacatatatgttgaaggatggatggtgtgttgg 184  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40723384 tcatcaaatgattgtacaaatatcattactcattatttagtttaacatctaataaaaacatgtcaatgacatatatgttgaaggatggatggtgtgttgg 40723285  T
Q  185 tggtggtggagaaatattttcatttgaaggaagagttattgttgaaatgtattttgttgttaactaatatttctacgtggtaagagtgtataatatatag 284  Q
    |||      |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||    
T  40723284 tgg------agaaatattttcatttgaaggaagagttattgttgaaatgtattttgtcgttaactaatatttctgcgtggtaaaagtgtataatatatag 40723191  T
Q  285 atttggagaaatatccaaccgatgagtat 313  Q
    |||||||||||||||||||||||||||||    
T  40723190 atttggagaaatatccaaccgatgagtat 40723162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 118
Target Start/End: Complemental strand, 33837267 - 33837234
Alignment:
Q  85 tcatcaaatgattgtacaaatatcattactcatt 118  Q
    |||||||||||||||||||||| |||||||||||    
T  33837267 tcatcaaatgattgtacaaataacattactcatt 33837234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 115
Target Start/End: Original strand, 36805162 - 36805195
Alignment:
Q  82 ttatcatcaaatgattgtacaaatatcattactc 115  Q
    |||| |||||||||||||||||||||||||||||    
T  36805162 ttattatcaaatgattgtacaaatatcattactc 36805195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 82 - 115
Target Start/End: Complemental strand, 25586588 - 25586555
Alignment:
Q  82 ttatcatcaaatgattgtacaaatatcattactc 115  Q
    ||||||||||||||||||||||||||||||||||    
T  25586588 ttatcatcaaatgattgtacaaatatcattactc 25586555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 115
Target Start/End: Complemental strand, 36037615 - 36037582
Alignment:
Q  82 ttatcatcaaatgattgtacaaatatcattactc 115  Q
    |||||| |||||||||||||||||||||||||||    
T  36037615 ttatcaccaaatgattgtacaaatatcattactc 36037582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 117
Target Start/End: Complemental strand, 47966697 - 47966669
Alignment:
Q  89 caaatgattgtacaaatatcattactcat 117  Q
    |||||||||||||||||||||||||||||    
T  47966697 caaatgattgtacaaatatcattactcat 47966669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 118
Target Start/End: Original strand, 46282411 - 46282447
Alignment:
Q  82 ttatcatcaaatgattgtacaaatatcattactcatt 118  Q
    |||||||||||||| ||||||||||||||||||||||    
T  46282411 ttatcatcaaatgagtgtacaaatatcattactcatt 46282447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 117
Target Start/End: Original strand, 40090836 - 40090868
Alignment:
Q  85 tcatcaaatgattgtacaaatatcattactcat 117  Q
    ||||||||| |||||||||||||||||||||||    
T  40090836 tcatcaaataattgtacaaatatcattactcat 40090868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 118
Target Start/End: Original strand, 54921700 - 54921736
Alignment:
Q  82 ttatcatcaaatgattgtacaaatatcattactcatt 118  Q
    |||||||||||||||||| |||||||||||| |||||    
T  54921700 ttatcatcaaatgattgttcaaatatcattattcatt 54921736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 292 times since January 2019
Visitors: 6702