View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_low_153 (Length: 323)
Name: NF0928_low_153
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_low_153 |
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Alignment Details
Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 89 - 224
Target Start/End: Complemental strand, 34578398 - 34578263
Alignment:
| Q |
89 |
gagggcattgttttagatgttacaccaagtgcaggcaagtcatttcacgaagatgtaaatagaaggaaggccatgtttcctgaaactggcatgtcagcaa |
188 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34578398 |
gagggaattgttttagatgttacaccaagtgcaggcaagtcatttcacgaagatgtaaatagaaggaaggccatgtttcctgaaactggcatgtcagcaa |
34578299 |
T |
|
| Q |
189 |
aaaatgttaatattttgaggtaaggctgctgccgct |
224 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
34578298 |
aaaatgttaatattttgaggtaaggctgctgccgct |
34578263 |
T |
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