View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0928_low_155 (Length: 320)

Name: NF0928_low_155
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0928_low_155
NF0928_low_155
[»] chr1 (2 HSPs)
chr1 (28-310)||(1462431-1462713)
chr1 (28-197)||(1496927-1497096)
[»] chr8 (1 HSPs)
chr8 (28-195)||(26790295-26790462)
[»] chr3 (1 HSPs)
chr3 (32-195)||(50276096-50276259)
[»] chr2 (3 HSPs)
chr2 (36-174)||(15869060-15869198)
chr2 (39-176)||(21980523-21980660)
chr2 (39-176)||(45197415-45197552)
[»] chr7 (1 HSPs)
chr7 (28-122)||(48664531-48664625)
[»] chr4 (2 HSPs)
chr4 (36-174)||(53075459-53075597)
chr4 (28-176)||(48436915-48437063)
[»] chr5 (1 HSPs)
chr5 (103-174)||(15161884-15161955)
[»] chr6 (1 HSPs)
chr6 (55-124)||(3156280-3156349)


Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 28 - 310
Target Start/End: Complemental strand, 1462713 - 1462431
Alignment:
Q  28 cacttctagcagcatctgtagcatcagcaacagcaattccaatatctgctttctttagcgccggggcatcatttacaccatctccagtcattccacaaat 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  1462713 cacttctagcagcatctgtagcatcagcaacagcaattccaatatctgctttctttagcgccggggcgtcatttacaccatctccagtcattccacaaat 1462614  T
Q  128 atgcttcctctcttgaagcctcttgacaatttcatatttgtgttctgcaatttcatacaaagagaaaaggtgttaaacactttttaattggacatcatta 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  1462613 atgcttcctctcttgaagcctcttgacaatttcatatttgtgttctgcaatttcatacaaagagaaaaggggttaaacactttttaattggacatcatta 1462514  T
Q  228 agaggtgtccaaagtgtgtctgagaaatgtccgtgtccaaaacaacttaaatatgataaatatataaatgattgtcgcctttg 310  Q
    | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1462513 aaaggtgtccaaagtgtgtctgagaagtgtccgtgtccaaaacaacttaaatatgataaatatataaatgattgtcgcctttg 1462431  T

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Target: chr1; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 28 - 197
Target Start/End: Original strand, 1496927 - 1497096
Alignment:
Q  28 cacttctagcagcatctgtagcatcagcaacagcaattccaatatctgctttctttagcgccggggcatcatttacaccatctccagtcattccacaaat 127  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||| ||| || ||||| |||||||||||||| ||||||||||| ||    
T  1496927 cacttctagcagcatctgtagcatcagcaactgcaattccgatatcggctttctttaacgcaggagcatcgtttacaccatctcctgtcattccacatat 1497026  T
Q  128 atgcttcctctcttgaagcctcttgacaatttcatatttgtgttctgcaatttcatacaaagagaaaagg 197  Q
    ||||||| ||||||| ||||||||||| ||||| |||||||| ||| | || ||| ||||||| ||||||    
T  1497027 atgcttcttctcttgcagcctcttgacgatttcgtatttgtgctctaccatatcaaacaaagataaaagg 1497096  T

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Target: chr8 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 28 - 195
Target Start/End: Complemental strand, 26790462 - 26790295
Alignment:
Q  28 cacttctagcagcatctgtagcatcagcaacagcaattccaatatctgctttctttagcgccggggcatcatttacaccatctccagtcattccacaaat 127  Q
    ||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| || || ||||| |||||||||||||||||||||||||| ||    
T  26790462 cacttctagcagcatctgtggcatcagcaaccgcaattccaatgtctgctttctttagtgcaggtgcatcgtttacaccatctccagtcattccacatat 26790363  T
Q  128 atgcttcctctcttgaagcctcttgacaatttcatatttgtgttctgcaatttcatacaaagagaaaa 195  Q
    ||| ||||| ||||| |||||||| ||||||||||| ||||||||| | || | ||||| ||||||||    
T  26790362 atgtttcctttcttggagcctcttaacaatttcatacttgtgttctaccatattatacagagagaaaa 26790295  T

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Target: chr3 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 32 - 195
Target Start/End: Complemental strand, 50276259 - 50276096
Alignment:
Q  32 tctagcagcatctgtagcatcagcaacagcaattccaatatctgctttctttagcgccggggcatcatttacaccatctccagtcattccacaaatatgc 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||  || || || || || |||||||| || ||||||||||| |||||     
T  50276259 tctagcagcatctgtagcatcagcaacagcaattccaatatctgctctctttaaggcaggagcgtcgttgacaccatcacctgtcattccacatatatgt 50276160  T
Q  132 ttcctctcttgaagcctcttgacaatttcatatttgtgttctgcaatttcatacaaagagaaaa 195  Q
    ||||||||||| ||| |||| || |||||||||||||||||| | || ||||| ||||||||||    
T  50276159 ttcctctcttgcagcttctttacgatttcatatttgtgttctaccatgtcatagaaagagaaaa 50276096  T

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Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 36 - 174
Target Start/End: Complemental strand, 15869198 - 15869060
Alignment:
Q  36 gcagcatctgtagcatcagcaacagcaattccaatatctgctttctttagcgccggggcatcatttacaccatctccagtcattccacaaatatgcttcc 135  Q
    |||||||| ||||||||||||||||||||||||||||| ||||| || |  || || |||||||| |||||||||||||||||||||  ||| |||||||    
T  15869198 gcagcatcagtagcatcagcaacagcaattccaatatcggcttttttcaatgcaggagcatcattcacaccatctccagtcattccaacaatgtgcttcc 15869099  T
Q  136 tctcttgaagcctcttgacaatttcatatttgtgttctg 174  Q
    ||||||| |   |||| ||||||||||| || |||||||    
T  15869098 tctcttgtaatttcttcacaatttcatacttatgttctg 15869060  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 39 - 176
Target Start/End: Original strand, 21980523 - 21980660
Alignment:
Q  39 gcatctgtagcatcagcaacagcaattccaatatctgctttctttagcgccggggcatcatttacaccatctccagtcattccacaaatatgcttcctct 138  Q
    ||||| || ||||||||||||||||| ||||| ||||| ||||| |  || || ||||| |||||||||||||| ||||| ||||| || |||||||| |    
T  21980523 gcatcagttgcatcagcaacagcaataccaatgtctgccttcttcaatgctggtgcatcgtttacaccatctccggtcataccacatatgtgcttcctat 21980622  T
Q  139 cttgaagcctcttgacaatttcatatttgtgttctgca 176  Q
    | || | |||||| ||||| || || ||||| ||||||    
T  21980623 cctgcaacctcttcacaatctcgtacttgtgctctgca 21980660  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 176
Target Start/End: Original strand, 45197415 - 45197552
Alignment:
Q  39 gcatctgtagcatcagcaacagcaattccaatatctgctttctttagcgccggggcatcatttacaccatctccagtcattccacaaatatgcttcctct 138  Q
    ||||| || |||||||| || |||||||||||||||||| | || |  || || |||||||| || |||||||| ||||| |||   || || ||||| |    
T  45197415 gcatcagttgcatcagccactgcaattccaatatctgctcttttcaatgcaggagcatcattcacgccatctcctgtcatcccaactatgtgtttcctat 45197514  T
Q  139 cttgaagcctcttgacaatttcatatttgtgttctgca 176  Q
    | || || ||||| ||||| |||||||| |||||||||    
T  45197515 cctggagtctctttacaatctcatatttatgttctgca 45197552  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 122
Target Start/End: Complemental strand, 48664625 - 48664531
Alignment:
Q  28 cacttctagcagcatctgtagcatcagcaacagcaattccaatatctgctttctttagcgccggggcatcatttacaccatctccagtcattcca 122  Q
    ||||||| || ||||||||||||||||  ||||| |||||||| ||||||||||| |  ||||||||||||||||| ||||||||||||||||||    
T  48664625 cacttcttgcggcatctgtagcatcagacacagctattccaatgtctgctttcttcaatgccggggcatcatttactccatctccagtcattcca 48664531  T

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Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 36 - 174
Target Start/End: Original strand, 53075459 - 53075597
Alignment:
Q  36 gcagcatctgtagcatcagcaacagcaattccaatatctgctttctttagcgccggggcatcatttacaccatctccagtcattccacaaatatgcttcc 135  Q
    |||||||||||||||||||||||||| ||||||||||| ||  | || |  || || ||||| || || |||||||| ||||| |||||||| |||||||    
T  53075459 gcagcatctgtagcatcagcaacagcgattccaatatcagcccttttcaaagctggagcatcgttgaccccatctccggtcatcccacaaatgtgcttcc 53075558  T
Q  136 tctcttgaagcctcttgacaatttcatatttgtgttctg 174  Q
    | ||||| | | || | ||||||||||||||||| ||||    
T  53075559 tttcttgcaacttccttacaatttcatatttgtgctctg 53075597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 176
Target Start/End: Original strand, 48436915 - 48437063
Alignment:
Q  28 cacttctagcagcatctgtagcatcagcaacagcaattccaatatctgctttctttagcgccggggcatcatttacaccatctccagtcattccacaaat 127  Q
    ||||||| |||||||| || |||||  |||| ||||| || || ||||| ||||| || || || |||||||| |||||||| |||||||| |||  |||    
T  48436915 cacttcttgcagcatcagttgcatcgtcaactgcaataccgatgtctgccttcttcagtgcaggtgcatcattcacaccatcaccagtcataccaacaat 48437014  T
Q  128 atgcttcctctcttgaagcctcttgacaatttcatatttgtgttctgca 176  Q
     || ||  | || || |||||||| ||||| || |||||||||||||||    
T  48437015 gtgttttttgtcctgcagcctcttcacaatctcgtatttgtgttctgca 48437063  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 103 - 174
Target Start/End: Original strand, 15161884 - 15161955
Alignment:
Q  103 caccatctccagtcattccacaaatatgcttcctctcttgaagcctcttgacaatttcatatttgtgttctg 174  Q
    ||||||||||||||||||||  ||| |||||||||||||| |   |||| ||||||||||| || |||||||    
T  15161884 caccatctccagtcattccaacaatgtgcttcctctcttgtaatttcttcacaatttcatacttatgttctg 15161955  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 124
Target Start/End: Complemental strand, 3156349 - 3156280
Alignment:
Q  55 caacagcaattccaatatctgctttctttagcgccggggcatcatttacaccatctccagtcattccaca 124  Q
    ||||||| |||||||||||||||||||| || || || |||||||| || || || || |||||||||||    
T  3156349 caacagctattccaatatctgctttcttaagagcaggagcatcattaacgccgtcaccggtcattccaca 3156280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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