View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_low_16 (Length: 691)
Name: NF0928_low_16
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 280 - 681
Target Start/End: Complemental strand, 19225234 - 19224841
Alignment:
| Q |
280 |
gagttaacttatgttggtaattaggtgcatgaattgtattaaattaaatatttcaccaaactacattctatccgtttcttttattatgaaagctactcat |
379 |
Q |
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| T |
19225234 |
gagttaacttatgttggtaattaggtgtatgaatttt-----attaaatatttcaccaaactacattctatccgtttcttttattatgaaagctactcat |
19225140 |
T |
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| Q |
380 |
ctttccttacgttttgggcaaaataaaattttaaaaccaatattaaaatgtttgacaattgcatgcatttgcatgtggggaaaggaaaaacaaagtagaa |
479 |
Q |
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| T |
19225139 |
ctttccttacgttttgggcaaaataaaattttaaaaccaatattaaaatgtttgacaattgcatgcatttgcatgtggggaaaggaaaaacaaagtacaa |
19225040 |
T |
|
| Q |
480 |
ttcaacaagttattgccgacatgataccattgggaccaagcttatgtatgaaccatgaatttatgaatattacaattcacttatgattatgacttggcca |
579 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | | | |||||||||| |
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| T |
19225039 |
ttcaacaagttattgccgacatgataccattgggaccaagcttatgtatgaaccatgaatttatgaatattacaattca-ttttca--aggacttggcca |
19224943 |
T |
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| Q |
580 |
tatcatcgtgcctaaaagctataccacccaagttgttgtaagtcacgttatacagtgccttaacaaaatatatgaaatgataaatattggctgttatttt |
679 |
Q |
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|| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
19224942 |
taccatcgtgcctaaaagctataccacccaacttgttgtaagtcacgttatacagtgccttaacaaaatatatgaaatgataaatattggcttttatttt |
19224843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 30 - 198
Target Start/End: Complemental strand, 19226640 - 19226472
Alignment:
| Q |
30 |
ggaaaatggacctagccttcttatttatgaccatataaccctagatattattaatcatgcacttagtggttgggtttacaccatgttctatatgaatcaa |
129 |
Q |
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|||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
19226640 |
ggaaaatggacctaaccttcttatttatgaccatacaaccctaaatattattaatcatgcacttattggttgggtttacaccatgttctatatgaatcaa |
19226541 |
T |
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| Q |
130 |
taccattaccatttaccaggtgttacaaatgtattgttgatcatgtttacctggactaagcatcataaa |
198 |
Q |
| |
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|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
19226540 |
taccatcaccatttaccaggtgttacaaatgtactgttgatcatgtttacctggactaaacatcataaa |
19226472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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