View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_low_160 (Length: 318)
Name: NF0928_low_160
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_low_160 |
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Alignment Details
Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 68 - 180
Target Start/End: Original strand, 15639054 - 15639166
Alignment:
| Q |
68 |
tttgggagttaaacaaagaaatattcatagaaatcataattaaatgaatttgagagtaaactgtttgaggataatttatgcatattcataacaaactaca |
167 |
Q |
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| T |
15639054 |
tttgggagttaaacaaagaaatattcatagaaatcataattcaatgaatttgagagtaaacggtttgaggataatttatgcatattcataataaactaca |
15639153 |
T |
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| Q |
168 |
ccaaaaaagtata |
180 |
Q |
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|||| |||||||| |
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| T |
15639154 |
ccaagaaagtata |
15639166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 175
Target Start/End: Original strand, 15593444 - 15593494
Alignment:
| Q |
125 |
aaactgtttgaggataatttatgcatattcataacaaactacaccaaaaaa |
175 |
Q |
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||||||||||||||||||||||| ||||| | || |||| ||||||||||| |
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| T |
15593444 |
aaactgtttgaggataatttatgtatattgaaaataaacgacaccaaaaaa |
15593494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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