View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_low_169 (Length: 315)
Name: NF0928_low_169
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_low_169 |
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Alignment Details
Target: chr7 (Bit Score: 136; Significance: 6e-71; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 49 - 184
Target Start/End: Complemental strand, 45937385 - 45937250
Alignment:
| Q |
49 |
tgatcctgcaattggatcctctcaattgtccatccagctccaatttccttagtggccgttaccattggatgatggaatataggattgcatttccatatca |
148 |
Q |
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| T |
45937385 |
tgatcctgcaattggatcctctcaattgtccatccagctccaatttccttagtggccgttaccattggatgatggaatataggattgcatttccatatca |
45937286 |
T |
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| Q |
149 |
ttcttaattgatggtggcaatggcatcactatagct |
184 |
Q |
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| T |
45937285 |
ttcttaattgatggtggcaatggcatcactatagct |
45937250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 218 - 315
Target Start/End: Complemental strand, 45937213 - 45937116
Alignment:
| Q |
218 |
gtagcatcctccactttgttgttatcaacctctttgctctttccccatagaacagaatatagtccaccaactatcagcagagaccctaatgcactata |
315 |
Q |
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| T |
45937213 |
gtagcatcctccactttgttgttatcaacctctttgctctttccccatagaacagaatatagtccaccaactatcagcagagaccctaatgcactata |
45937116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 230 - 310
Target Start/End: Complemental strand, 10562689 - 10562609
Alignment:
| Q |
230 |
actttgttgttatcaacctctttgctctttccccatagaacagaatatagtccaccaactatcagcagagaccctaatgca |
310 |
Q |
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|||||||||||||| |||||||||||||||||||| |||| || ||||| |||||||| |||| ||||||||||| |||| |
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| T |
10562689 |
actttgttgttatccacctctttgctctttccccacagaaaagcatataacccaccaacaatcaacagagaccctattgca |
10562609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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