View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0928_low_17 (Length: 659)

Name: NF0928_low_17
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0928_low_17
NF0928_low_17
[»] chr8 (1 HSPs)
chr8 (1-655)||(8887478-8888134)


Alignment Details
Target: chr8 (Bit Score: 568; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 1 - 655
Target Start/End: Complemental strand, 8888134 - 8887478
Alignment:
Q  1 ttagatgtttgtactatttatctatatcaattgagtgtgtattcaacttttggagggtaggttcattatacctgtgttgattattgatattcaccatctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8888134 ttagatgtttgtactatttatctatatcaattgagtgtgtattcaacttttggagggtaggttcattatacctgtgttgattattgatattcaccatctt 8888035  T
Q  101 ttttgattgatcatgccaannnnnnnnnnnnnnnnnngtgctgcaaggattctaacaatccaagtttttgcctctctttttgttaatgttcattatcttg 200  Q
    |||||||||||||||||||                  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8888034 ttttgattgatcatgccaattttttctttttctttttgtgcttcaaggattctaacaatccaagtttttgcctctctttttgttaatgttcattatcttg 8887935  T
Q  201 atcaaggatgctggattttcttttatgtatatgtgttagatttatggatcctgtgtttggcatggttttaactttgatctttgaagaatgttcatatcga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8887934 atcaaggatgctggattttcttttatgtatatgtgttagatttatggatcctgtgtttggcatggttttaactttgatctttgaagaatgttcatatcga 8887835  T
Q  301 ccctgtttgctagtgtttgtggctgctttgtttcatacttttgttaatagtgtattgaaatttaattgaaccaattggctgctttgtttcttatggattt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8887834 ccctgtttgctagtgtttgtggctgctttgtttcatacttttgttaatagtgtattgaaatttaattgaaccaattggctgctttgtttcttatggattt 8887735  T
Q  401 tgaaggagtattagtgtcagaaggctgtctggatagcagttttggtactttgtatcaaattttaataaacggcttaactttttgccgtttgatgtctgta 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  8887734 tgaaggagtattagtgtcagaaggctgtctggatagcagttttggtactttgtatcaaattttaataaacggcttaaatttttgccgtttgatgtctgta 8887635  T
Q  501 ctcgtactcatcgctatttatttgaatttgttatgaccattaaatggtgaaattttaagccgt--ttttacattggacgaattatttgaaatgggaaatt 598  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  8887634 ctcgtactcattgctatttatttgaatttgttatgaccattaaatggtgaaattttaagccgtttttttacattggacgaattatttgaaatgggaaatt 8887535  T
Q  599 tgttcgatacttgttatttcttgaagataacatcggtcttagacatattattcgaca 655  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||    
T  8887534 tgttcgatacttgttatttcttgaagataacatcggtcttagacgttttattggaca 8887478  T

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