View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_low_171 (Length: 314)
Name: NF0928_low_171
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_low_171 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 15 - 283
Target Start/End: Original strand, 5770654 - 5770922
Alignment:
| Q |
15 |
gacaacaaactaagtcaactttacaacattaccatgctcaaatatgcaaaatggacaaattagtgctattaacatgaactttgaaccctgctaatattta |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
5770654 |
gacaacaaactaagtcaactttacaacattaccatgctcaaatatgcaaaatggaccaattagtgctattaacatgaactttgaaccctgctaatatttt |
5770753 |
T |
|
| Q |
115 |
ttctatctccctcctaaaagcaatgaaaacaaatggaccaggcatgtgttgatgtataaacacgaaaacaaatgaaccacaattagcctctgcatannnn |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
5770754 |
ttctatctccctcctaaaagcaatgaaaacaaatggaccaggcatgtgttgatgtataaacacgaaaacaaatgaaccacaattagtctctgcatatttt |
5770853 |
T |
|
| Q |
215 |
nnnaaaaagagtaagaaagaaagatagatcatacatcggtaacttttatgcacagtttaaccccaattt |
283 |
Q |
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||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
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| T |
5770854 |
tttaaaaagagtaagaaagaaagatacatcatacatcagtaacttttatgcacagtttaaccccaattt |
5770922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 15 - 283
Target Start/End: Complemental strand, 33867395 - 33867127
Alignment:
| Q |
15 |
gacaacaaactaagtcaactttacaacattaccatgctcaaatatgcaaaatggacaaattagtgctattaacatgaactttgaaccctgctaatattta |
114 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33867395 |
gacaacaaactaagtcaactttacaacattaccatgctcaaatatgcaaaatggaccaattagtgctattaacatgaactttgaaccctgctaatattta |
33867296 |
T |
|
| Q |
115 |
ttctatctccctcctaaaagcaatgaaaacaaatggaccaggcatgtgttgatgtataaacacgaaaacaaatgaaccacaattagcctctgcatannnn |
214 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
33867295 |
ttctatctccctcctaaaagcaatgaaaacaaatggatcaggcatgcgttgatgtataaacaggaaaacaaatgaaccacaattagactctgcatatttt |
33867196 |
T |
|
| Q |
215 |
nnnaaaaagagtaagaaagaaagatagatcatacatcggtaacttttatgcacagtttaaccccaattt |
283 |
Q |
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||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
33867195 |
tttaaaaagagtaagaaagaaagatacatcatacatcagtaacttttatgcacagtttaacaccaattt |
33867127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 43904725 - 43904661
Alignment:
| Q |
14 |
agacaacaaactaagtcaactttacaacattaccatgctcaaatatgcaaaatggacaaattagt |
78 |
Q |
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|||| |||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
43904725 |
agactacaaaccaagtcaactttacaacattaccatactcaaatatgcaaaatggaccaattagt |
43904661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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