View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_low_172 (Length: 313)
Name: NF0928_low_172
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_low_172 |
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Alignment Details
Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 71 - 241
Target Start/End: Complemental strand, 31251916 - 31251746
Alignment:
| Q |
71 |
ctagagttccaaacagaaacaatgacgagaaaagaaacacatcatttgattgnnnnnnnnnnnnnnatgacttagtatgtaaaataacaggtttaatgtt |
170 |
Q |
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| T |
31251916 |
ctagaattccaaacagaaacaatgacgagaaaagaaacacatcatttgattgtttttttcctttttatgacttagtatgtaaaataacaggtttaatgtt |
31251817 |
T |
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| Q |
171 |
atttttttga-ggaagagtcggtttaatannnnnnnnnnnnattatttaatatgaaatctcccgtttctttt |
241 |
Q |
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| T |
31251816 |
atttttttgagggaagagtcggtttaata-tttttttttttattatttaatatgaaatctcccgtttctttt |
31251746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 71 - 122
Target Start/End: Original strand, 25815227 - 25815278
Alignment:
| Q |
71 |
ctagagttccaaacagaaacaatgacgagaaaagaaacacatcatttgattg |
122 |
Q |
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| T |
25815227 |
ctagagttccaaacagaaacaatgacgagaaaagaaacacatcatttgattg |
25815278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 9452967 - 9453007
Alignment:
| Q |
29 |
tatatttaatgaattcaccgcttcatcttaaaagagcaaca |
69 |
Q |
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| T |
9452967 |
tatatttaatgaatttaccgcttcatcttaaaagagcaaca |
9453007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 242
Target Start/End: Original strand, 25815373 - 25815404
Alignment:
| Q |
211 |
attatttaatatgaaatctcccgtttcttttc |
242 |
Q |
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| T |
25815373 |
attatttaatatgaaatctcccgtttcttttc |
25815404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 46424154 - 46424194
Alignment:
| Q |
29 |
tatatttaatgaattcaccgcttcatcttaaaagagcaaca |
69 |
Q |
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| T |
46424154 |
tatatttaatgaattcatcgcttcatcttaaaagagcaaca |
46424194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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