View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_low_173 (Length: 312)
Name: NF0928_low_173
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_low_173 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 29 - 312
Target Start/End: Original strand, 45580002 - 45580279
Alignment:
| Q |
29 |
aaagataactatcgaataatctatttgtagttgacgtcggtgtaaaattagtatacaccgacggcacatatcttttttctcaacaaaataagaacaaaat |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
45580002 |
aaagataactatcgaataatctatttgtagttgacgtcggtgtaaaattagtatacactgacggcacatatcttttttctcaacaaaataagaacaaaat |
45580101 |
T |
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| Q |
129 |
gcattaaagattcaggaagacagagagnnnnnnnnnnnnnnnntaccatcttgaggaagagtgtctctcatccaatcctcatcaacgatgtcaattagaa |
228 |
Q |
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| T |
45580102 |
gcattaaagattcaggaagacagagag------agaaaaaaaataccatcttgaggaagagtgtctctcatccaatcctcatcaacgatgtcaattagaa |
45580195 |
T |
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| Q |
229 |
ttcccaaactcagttctgccannnnnnncttcacactgttaataacaccaaataaaatgacaagaattaggttttggggggtta |
312 |
Q |
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||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
45580196 |
ttcccaaactcagttctgccatttttttcttcacactgttaataacacaaaataaaatgacaagaattaggttttggggggtta |
45580279 |
T |
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