View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_low_175 (Length: 310)
Name: NF0928_low_175
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_low_175 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 30 - 310
Target Start/End: Complemental strand, 53540580 - 53540300
Alignment:
| Q |
30 |
ccatctacttcgtcttcatcttcaacatcatcttataaattggttaagaaaagcaaaagttagtttctgcagaacttcacattattttgattttttgtgt |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
53540580 |
ccatctacttcgtcttcatcttcaacatcatcttataaattggttaagaaaagcaaaagttagtttccgcagaacttcacattattttgattttttgtgt |
53540481 |
T |
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| Q |
130 |
atagaattggaattaaataatgatttccacgcataccatattcattatcagatatatcctccccttcattgttctgataacactcagcctcgaaatcttc |
229 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53540480 |
atagaattggaattaaataatgatttccactcataccatattcattatcagatatatcctccccttcattgttctgataacactcagcctcgaaatcttc |
53540381 |
T |
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| Q |
230 |
atgatgaaggaaactcaatccatcatcaactgtttctgctatgttgccttctacatctgcatcataggaattgtgtaagaa |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53540380 |
atgatgaaggaaactcaatccatcatcaactgtttctgctatgttgccttctacatctgcatcataggaattgtgtaagaa |
53540300 |
T |
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