View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_low_176 (Length: 305)
Name: NF0928_low_176
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_low_176 |
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Alignment Details
Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 40 - 185
Target Start/End: Original strand, 8894103 - 8894248
Alignment:
| Q |
40 |
ggttttgtgggatggtatgcaagccataagatgaggattataatgccaagtacgaggaagaagattgtgatgcatatgcagtgttcacgttttggagcat |
139 |
Q |
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| T |
8894103 |
ggttttgagggatggtatgcaagccataagatgaggattataatgccaagtacaaggaagaagattgtgatgcatatgcagtgttcacgttttggagcat |
8894202 |
T |
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| Q |
140 |
taggtactctataacgaggaaccatacatttgtcttccatgggata |
185 |
Q |
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| T |
8894203 |
taggtactctataacgaggaaccatacctttgtgttccatgggata |
8894248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 71 - 110
Target Start/End: Original strand, 212350 - 212389
Alignment:
| Q |
71 |
tgaggattataatgccaagtacgaggaagaagattgtgat |
110 |
Q |
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| T |
212350 |
tgaggagtataatgccaagtaagaggaagaagattgtgat |
212389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 71 - 110
Target Start/End: Complemental strand, 239904 - 239865
Alignment:
| Q |
71 |
tgaggattataatgccaagtacgaggaagaagattgtgat |
110 |
Q |
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| T |
239904 |
tgaggagtataatgccaagtaagaggaagaagattgtgat |
239865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 71 - 110
Target Start/End: Original strand, 725973 - 726012
Alignment:
| Q |
71 |
tgaggattataatgccaagtacgaggaagaagattgtgat |
110 |
Q |
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| T |
725973 |
tgaggagtataatgccaagtaagaggaagaagattgtgat |
726012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 71 - 110
Target Start/End: Complemental strand, 793259 - 793220
Alignment:
| Q |
71 |
tgaggattataatgccaagtacgaggaagaagattgtgat |
110 |
Q |
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| T |
793259 |
tgaggagtataatgccaagtaagaggaagaagattgtgat |
793220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 71 - 110
Target Start/End: Original strand, 798474 - 798513
Alignment:
| Q |
71 |
tgaggattataatgccaagtacgaggaagaagattgtgat |
110 |
Q |
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| T |
798474 |
tgaggagtataatgccaagtaagaggaagaagattgtgat |
798513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 134
Target Start/End: Original strand, 24281855 - 24281937
Alignment:
| Q |
52 |
tggtatgcaagccataagatgaggattataatgccaagtacgaggaagaagattgtgatgcatatgcagtgttcacgttttgg |
134 |
Q |
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| T |
24281855 |
tggtatgcaagccataagatgagcagtataatgccaagtaagaggaagaagattgtgatgcatatgcaatattcacgttttgg |
24281937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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