View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_low_178 (Length: 302)
Name: NF0928_low_178
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_low_178 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 156 - 302
Target Start/End: Original strand, 2243932 - 2244078
Alignment:
| Q |
156 |
tttatagaaaaaggatgttacattattcacaactattggatcagtcaaaggcttaataaacttgcgcgccaagtttcgtcaggcttacgggagtatgatc |
255 |
Q |
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| T |
2243932 |
tttatagaaaaaggatgttacattattcacaactattggatcagtcaaaggcttaataaacttgcgcgccaagttttgtcaggcttacgggagtatgatc |
2244031 |
T |
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| Q |
256 |
ctagcacaaaagaaatggtatgtggttatgataactaaaaacaaatt |
302 |
Q |
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| T |
2244032 |
ctagcacaaaagaaatggcacgaggttatgagaactaaaaacaaatt |
2244078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 114 - 270
Target Start/End: Original strand, 31780640 - 31780794
Alignment:
| Q |
114 |
ttaccaaaatctgtggcatgnnnnnnntgtaaaagcaacacgtttatagaaaaaggatgttacattattcacaactattggatcagtcaaaggcttaata |
213 |
Q |
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| T |
31780640 |
ttaccaaaatctgtggcatgaaaaaaatgtaaaagcaacatgtttaaagaaa--ggatgttacactattcacaactattggatcactcaaaggcttaata |
31780737 |
T |
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| Q |
214 |
aacttgcgcgccaagtttcgtcaggcttacgggagtatgatcctagcacaaaagaaa |
270 |
Q |
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| T |
31780738 |
aacttgtgtgccaagtttcgtcaggtttacggaagtatgattctagcacaaaagaaa |
31780794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 163 - 264
Target Start/End: Complemental strand, 29059349 - 29059248
Alignment:
| Q |
163 |
aaaaaggatgttacattattcacaactattggatcagtcaaaggcttaataaacttgcgcgccaagtttcgtcaggcttacgggagtatgatcctagcac |
262 |
Q |
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|||||||||| |||||||||||||| ||||||||||| |||||| || |||||| |||||||||||| |||||| ||| |||||||||||||||| || |
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| T |
29059349 |
aaaaaggatgctacattattcacaataattggatcagtggaaggctaaagaaacttacgcgccaagttttgtcaggtttatgggagtatgatcctagtac |
29059250 |
T |
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| Q |
263 |
aa |
264 |
Q |
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|| |
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| T |
29059249 |
aa |
29059248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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