View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_low_18 (Length: 654)
Name: NF0928_low_18
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 79 - 629
Target Start/End: Complemental strand, 53090695 - 53090149
Alignment:
| Q |
79 |
ctgctcaccagaaatacagagatagacacaagggcgccattcaggtccgtcaaagaggctgttacattattcggtgataaagttttagctggagagctct |
178 |
Q |
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| T |
53090695 |
ctgctcaccagaaatacagagatagacacaagggcgccattcaggtccgtcaaagaggctgttacattattcggtgataaagttttagctggagagctct |
53090596 |
T |
|
| Q |
179 |
atgcaactgcaaccaaactcaaacaccaggttctatacaccatcacatcactcaattttattagaatatcaaaatggttaattacttgaattatttaaat |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53090595 |
atgcaactgcaaccaaactcaaacaccaggttctatacaccatcacatcactcaattttattagaatatcaaaatggttaattacttgaattatttaaat |
53090496 |
T |
|
| Q |
279 |
caccaataaggaattcttggacattttaattgaaggtccatccatcaataagattctcctatcctatgannnnnnnnngaaacagggtacaaactacaag |
378 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
53090495 |
caccaataaggaattcttggacattttaattgaaggtccatccatcaataagattctcctatcctatgttttttttttgaaacagggtacaaactacaag |
53090396 |
T |
|
| Q |
379 |
tgcagattgtcatcaattttgcagagtgtgtcatgtgcttgcttgtatttgtgtcttttgctttcttcaccgtctaattgaataaaggaagtgaagggnn |
478 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53090395 |
tgcagattgtcatcaa-tttgcagagtgtgtcatgtgcttgcttgtatttgtgtcttttgctttcttcaccgtctaattgaataaaggaagtgaag---a |
53090300 |
T |
|
| Q |
479 |
nnnnnnnnttctgcttttaatttttacttttgtctgtgcacaatatataagtaaattcatttgtgttttcaatatagcgtgacaagagaaatgctagcaa |
578 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
53090299 |
aaaaaaaattctgcttttaatttttacttttgtctgtgcactatatataagtaaattcatttgtgctttcaatatagtgtgacaagagaaatgctagcaa |
53090200 |
T |
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| Q |
579 |
cacacattgttggaaaatgtatgttagaatgtgtgttgataacatttctca |
629 |
Q |
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|||||||| ||| ||| | |||||||||| ||||||||||||||||||||| |
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|
| T |
53090199 |
cacacattattgaaaagtatatgttagaacgtgtgttgataacatttctca |
53090149 |
T |
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