View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_low_180 (Length: 299)
Name: NF0928_low_180
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_low_180 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 30 - 285
Target Start/End: Complemental strand, 33523618 - 33523360
Alignment:
| Q |
30 |
ataagtagttggaggatgagatcctcaacatgttaatttcaaaaatcatgtattaaaaggctcaaaatttaggaaacgatcatctcggaaagaggatgga |
129 |
Q |
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| T |
33523618 |
ataagtagttggaggatgagatcctcaacatgttaatttcaaaaatcatgtattaaaaggctcaaaatttaggaaacgatcatctcggaaagaggatgga |
33523519 |
T |
|
| Q |
130 |
attaatgttgccatcgttgtggaatttcaaattccacaaggaagaagaaagagaagggatggatgcttgcat---gttgagtaatgaaaaacacaaatat |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
33523518 |
attaatgttgccatcgttgtggaatttcaaattccacaaggaagaagaaagagaagggatggatgcttgcatgttgttgagtaatgaaaaacacaaatat |
33523419 |
T |
|
| Q |
227 |
ggatggttttcaacccaaaatatgtgattttgtgatttttgaatctcttgctcctatga |
285 |
Q |
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| T |
33523418 |
ggatggttttcaacccaaaatatgtgattttgtgatttttgaatctcttgctcctatga |
33523360 |
T |
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