View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0928_low_186 (Length: 293)
Name: NF0928_low_186
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_low_186 |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 43732437 - 43732157
Alignment:
| Q |
1 |
ataccgcactttgtttacaacgctctttttgccgctatttagataagtttaattgaccctgcatgtttttgttattttgtaagtaggaaaattctttaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
43732437 |
ataccgcactttgtttacaacgctctttttgccgctatttagacaagtttaattgaccttgcatgtttttgttattttgtaagtaggaaatttctttaga |
43732338 |
T |
|
| Q |
101 |
ttgattcacatatgaaggtcatatgctaatgctctccattagtttatgtggtgtttttgtttattgatgcacttcctttacattgctcttttttgccgtt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43732337 |
ttgattcacatatgaaggtcatatgctaatgctctccattagtttctgtggtgtttttgtttattgatgcacttcctttacattgctcttttttgccgtt |
43732238 |
T |
|
| Q |
201 |
gtttagaaaagtttaattgacgtgnnnnnnnaagtaataaatttctttagatcgattcacatactaaggtcatatgatatt |
281 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43732237 |
gtttagaaaagtttaattgacgtgtttttttaagtaataaatttctttagatcgattcacatactaaggtcatatgatatt |
43732157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 75 - 221
Target Start/End: Complemental strand, 43732212 - 43732067
Alignment:
| Q |
75 |
ttttgtaagtaggaaaattctttagattgattcacatatgaaggtcatatgctaatgctctccattagtttatgtggtgtttttgtttattgatgcactt |
174 |
Q |
| |
|
|||| |||||| ||| |||||||||| |||||||||| ||||||||||| || || | | ||||||| |||| | || |||||||||||||||||| |
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| T |
43732212 |
ttttttaagtaataaatttctttagatcgattcacatactaaggtcatatgatattgttgtttgttagtttctgtgtttttattgtttattgatgcactt |
43732113 |
T |
|
| Q |
175 |
cctttacattgctcttttttgccgttgtttagaaaagtttaattgac |
221 |
Q |
| |
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| |||||| ||||| ||||||||| | |||||| ||||||||||||| |
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|
| T |
43732112 |
cgtttacaatgctc-tttttgccgctatttagacaagtttaattgac |
43732067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 57
Target Start/End: Complemental strand, 43732118 - 43732067
Alignment:
| Q |
6 |
gcactttgtttacaacgctctttttgccgctatttagataagtttaattgac |
57 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||| ||||||||||||| |
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|
| T |
43732118 |
gcacttcgtttacaatgctctttttgccgctatttagacaagtttaattgac |
43732067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 18139147 - 18138865
Alignment:
| Q |
1 |
ataccgcactttgtttacaacgctctttttgccgctatttagataagtttaattgaccctgcatgtttttgttattttgtaa-gtaggaaaattctttag |
99 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| ||||||| ||| ||||||| |||||||| |
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|
| T |
18139147 |
atactgcactttgtttacaacgctctttttgccgctatttagacaagttaaattgaccttgcatgtttttattattttttaaagtaggaagtttctttag |
18139048 |
T |
|
| Q |
100 |
attgattcacatatgaaggtcatatgctaatgctctccattagtttatgtggtgtttttgtttattgatgcacttcctttacattgctcttttttgccgt |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
18139047 |
attgattcacatatgaaggtcatatgctaatgctcttcgttagtttatgtggtgtttttgtttattgatgcacttcctttacattgctctttttttccgc |
18138948 |
T |
|
| Q |
200 |
tgtttagaaaagtttaattgacgtg-nnnnnnnaagtaataaatttctttagatcgattcacatactaaggtcatatgatatt |
281 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||| |
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|
| T |
18138947 |
tgtttagaaaagtttaattgacgtgttttttttaagtaataaatttttttagatcgattcacatactaaagtcatatgatatt |
18138865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 148 - 279
Target Start/End: Original strand, 9071497 - 9071630
Alignment:
| Q |
148 |
gtggtgtttttgtttattgatgcacttcctttacattgctcttttttgccgttgtttagaaaagtttaattgacgtg--nnnnnnnaagtaataaatttc |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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|
| T |
9071497 |
gtggtgtttttgtttattgatgcacttcctttacattgctcttttttgccgttgtttagaaaagtttaattgacgtgttttttttttaataataaatttc |
9071596 |
T |
|
| Q |
246 |
tttagatcgattcacatactaaggtcatatgata |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
9071597 |
tttagatcgattcacatactaaggtcatatgata |
9071630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 18138826 - 18138762
Alignment:
| Q |
6 |
gcactttgtttacaacgctctttttgccgctatttagataagtttaattgaccctgcatgttttt |
70 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||| ||||||||||||| ||||| ||||| |
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| T |
18138826 |
gcacttcgtttacaatgctctttttgccgctatttagagaagtttaattgacattgcattttttt |
18138762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 18138838 - 18138775
Alignment:
| Q |
157 |
ttgtttattgatgcacttcctttacattgctcttttttgccgttgtttagaaaagtttaattgac |
221 |
Q |
| |
|
||||||||||||||||||| |||||| ||||| ||||||||| | |||||| ||||||||||||| |
|
|
| T |
18138838 |
ttgtttattgatgcacttcgtttacaatgctc-tttttgccgctatttagagaagtttaattgac |
18138775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 193
Target Start/End: Original strand, 9071594 - 9071695
Alignment:
| Q |
92 |
ttctttagattgattcacatatgaaggtcatatgctaatgctctccattagtttatgtggtgtttttgtttattgatgcacttcctttacattgctcttt |
191 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||| || || | | ||||||| ||| | || ||||||||||||||||||| |||||| |||||||| |
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|
| T |
9071594 |
ttctttagatcgattcacatactaaggtcatatgatactgttgtttgttagtttctgtatttttattgtttattgatgcacttcgtttacaatgctcttt |
9071693 |
T |
|
| Q |
192 |
tt |
193 |
Q |
| |
|
|| |
|
|
| T |
9071694 |
tt |
9071695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 9071671 - 9071735
Alignment:
| Q |
6 |
gcactttgtttacaacgctctttttgccgctatttagataagtttaattgaccctgcatgttttt |
70 |
Q |
| |
|
|||||| |||||||| |||||||||| |||||||||| ||||||||||||| ||||| ||||| |
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|
| T |
9071671 |
gcacttcgtttacaatgctctttttgacgctatttagtgaagtttaattgacattgcattttttt |
9071735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 178; Significance: 5e-96; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 5336980 - 5337265
Alignment:
| Q |
1 |
ataccgcactttgtttacaacgctctttttgccgctatttagataagtttaattgaccctgcatgtttttgttattttgtaa-gtaggaaaattctttag |
99 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||| ||| |||||||| || ||||| |
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|
| T |
5336980 |
atacctcactttgtttacaacactctttttgccgctatttagacaagtttaattgaccttgcatgtttttattattttttaaagtaggaaatttatttag |
5337079 |
T |
|
| Q |
100 |
attgattcacatatgaaggtcatatgctaatgctctccattagtttatgtggtgtttttgtttattgatgcacttcctttacattgctc-ttttttgccg |
198 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5337080 |
attgattcacatataaaggtcatatgttaatgctctccattagtttctgtagtttttttgtttattgatgcacttcctttacattgctctttttttgccg |
5337179 |
T |
|
| Q |
199 |
ttgtttag-aaaagtttaattgacgtg--nnnnnnnaagtaataaatttctttagatcgattcacatactaaggtcatatgatatt |
281 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5337180 |
ttgtttagaaaaagtttaattgacgtgtttttttttaagtaataaatttctttagatcgattcacatactaaggtcatatgatatt |
5337265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 221
Target Start/End: Original strand, 5337205 - 5337355
Alignment:
| Q |
70 |
tgttattttgtaagtaggaaaattctttagattgattcacatatgaaggtcatatgctaatgctctccattagtttatgtggtgtttttgtttattgatg |
169 |
Q |
| |
|
|||| |||| |||||| ||| |||||||||| |||||||||| ||||||||||| || || | | ||||||| |||| | || ||||||||||||| |
|
|
| T |
5337205 |
tgtttttttttaagtaataaatttctttagatcgattcacatactaaggtcatatgatattgttgtttgttagtttctgtgtttttattgtttattgatg |
5337304 |
T |
|
| Q |
170 |
cacttcctttacattgctcttttttgccgttgtttagaaaagtttaattgac |
221 |
Q |
| |
|
||||| |||||| ||||| ||||| ||| | |||||| ||||||||||||| |
|
|
| T |
5337305 |
cacttaatttacaatgctc-tttttcccgctatttagagaagtttaattgac |
5337355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 5337312 - 5337355
Alignment:
| Q |
14 |
tttacaacgctctttttgccgctatttagataagtttaattgac |
57 |
Q |
| |
|
||||||| ||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
5337312 |
tttacaatgctctttttcccgctatttagagaagtttaattgac |
5337355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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