View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0928_low_19 (Length: 649)
Name: NF0928_low_19
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_low_19 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 557; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 11 - 603
Target Start/End: Complemental strand, 32502803 - 32502211
Alignment:
| Q |
11 |
cacagacaagaaattgaaaaaactagcattcattaactcaaataaaacaacataattcatatcagataacatgaaatagaaaggatactcttaaagaaat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32502803 |
cacagacaagaaattgaaaaaactagcattcattaactcaaataaaacaacataattcatatcagataacatgaaatagaaaggatactcttaaagaaat |
32502704 |
T |
|
| Q |
111 |
aaattacaaacacaaacaatatcatggattagccaagctagtagcactatcacaagatggcgtgctttcttagccggattcaaaattgtaaattgcaatt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32502703 |
aaattacaaacacaaacaatatcatggattagccaagctagtagcactatcacaagatggcgtgctttcttagccggattcaaaattgtaaattgcaatt |
32502604 |
T |
|
| Q |
211 |
tctttgaatgtcctgggaaaatgaagtttgtctcaataacatgaacaaatttgaccaagatagtgtctaacttgacggtcccatgaaattatactaagtg |
310 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
32502603 |
tctttgaatgtcctgggaaaatgaagcttgtctcaataacatgaacaaatttgaccaagatagtgtctaactcgacggtcccatgaaattatactaagtg |
32502504 |
T |
|
| Q |
311 |
aatatagacaacatggttcttacatcgctgtcattttgaaatttcattttggtgagttaaacatgtccatttgagtcgaccgatgcaccacgatacttaa |
410 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32502503 |
aatatagacaacatggttcttacatcgttgtcattttgaaatttcattttggtgagttaaacgtgtccatttgagtcgaccgatgcaccacgatacttaa |
32502404 |
T |
|
| Q |
411 |
caatgaccaccattcttgggtgactttgattgagaataccattcaattggctcttcaaattcgagattgtaacattatcattaatccaaaacaaatttag |
510 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32502403 |
caatgaccaccattcttgggtcactttgattgagaataccatttaattatctcttcaaattcgagattgtaacattatcattaatccaaaacaaatttag |
32502304 |
T |
|
| Q |
511 |
tttgtctttgttacagtaaactgcagccagattaaaattcattttcaactaggttataattcattttgcaactgtgttaactaggacaacagt |
603 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32502303 |
tttgtctttgttacagtaaactgcagccggattaaaattcattttcaactaggttataattcattttgcaactgtgttaactaggacaacagt |
32502211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 18375399 - 18375475
Alignment:
| Q |
17 |
caagaaattgaaaaaactagcattcattaactcaaataaaacaacataattcatatcagataacatgaaatagaaag |
93 |
Q |
| |
|
|||||||||||||| |||| |||||||||| |||| || |||||||||||||||| ||||||||| |||| ||||| |
|
|
| T |
18375399 |
caagaaattgaaaatactaccattcattaattcaagtacaacaacataattcataatagataacatcaaattgaaag |
18375475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 555
Target Start/End: Original strand, 11648282 - 11648397
Alignment:
| Q |
443 |
agaataccattcaattggctcttcaaattcgagattgtaacattatcattaatccaa---aacaaatttagtttgtctttgttacagtaaactgcagcca |
539 |
Q |
| |
|
|||| |||||||| |||||||||||||| | | ||||||||||||||| || | | ||||||||||||||| | ||||| |||||||| ||| | |
|
|
| T |
11648282 |
agaagaccattcagttggctcttcaaatcataaagtgtaacattatcattgattctaattaacaaatttagtttgccactgttatagtaaactcgagcta |
11648381 |
T |
|
| Q |
540 |
gattaaaattcatttt |
555 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
11648382 |
ggttaaaattcatttt |
11648397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1178 times since January 2019
Visitors: 6711