View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
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Alignment Overview
Query: NF0928_low_191 (Length: 290)
Name: NF0928_low_191
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
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Alignment Details
Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 4301686 - 4301848
Alignment:
| Q | 1 | ccaattaacgaattcatgtcatggctctccttagcaccacaagaccacaaatcagaatgtagctccacctctgtgtttccttnnnnnnnnnttgtttaac | 100 | Q |
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| T | 4301686 | ccaattaacgaattcatgtcatggctctccttggcaccacaa--------atcagaatgtagctccacctctgtgtttccttaaaaaaaaattgtttaac | 4301777 | T |
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| Q | 101 | tatatatatttataaactagatcaatcactagggtgtttctctattttgtaggacttggtcttagtcctat | 171 | Q |
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| T | 4301778 | tatatatatttataaactagatcaatcattagggtgtttctctattttgtaggacttggtcttagtcctat | 4301848 | T |
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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 4296198 - 4296285
Alignment:
| Q | 1 | ccaattaacgaattcatgtcatggctctccttagcacc---------acaagaccacaaatcagaatgtagctccacctctgtgtttc | 79 | Q |
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| T | 4296198 | ccaattaatgaattcatgtcatggctctccttggcaccacaatcaccacaagaccacagatcagaatgtagctccagctctgtgtttc | 4296285 | T |
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