View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0928_low_194 (Length: 288)
Name: NF0928_low_194
Description: NF0928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0928_low_194 |
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Alignment Details
Target: chr6 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 45 - 134
Target Start/End: Original strand, 11124955 - 11125044
Alignment:
| Q |
45 |
ataggggatcaaacatacaattaagccttattttaattgtgttcttcttttgagataattatatttgtggcaatccatagtatacttgtt |
134 |
Q |
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| T |
11124955 |
ataggggatcaaacatacaattaagccttattttaattgtgttcttcttttcagataattatatttgtggcaatccatagtatacttgtt |
11125044 |
T |
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Target: chr6; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 44 - 131
Target Start/End: Original strand, 11122288 - 11122375
Alignment:
| Q |
44 |
cataggggatcaaacatacaattaagccttattttaattgtgttcttcttttgagataattatatttgtggcaatccatagtatactt |
131 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||| |
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| T |
11122288 |
cataagggatcaaacatacaattaagccttattttaattgtgttcttcttttcagataattatatttgtggcaatccaaaggatactt |
11122375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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